ENSDARG00000041232


Danio rerio

Features
Gene ID: ENSDARG00000041232
  
Biological name :rps29
  
Synonyms : ribosomal protein S29 / rps29
  
Possible biological names infered from orthology : 40S ribosomal protein S29 / P62273 / P62274
  
Species: Danio rerio
  
Chr. number: 20
Strand: 1
Band:
Gene start: 54079341
Gene end: 54085949
  
Corresponding Affymetrix probe sets: Dr.24815.2.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000060443
NCBI entrez gene - 405889     See in Manteia.
swissprot - Q6Q419
ZFIN ID - ZDB-GENE-040622-5
Ensembl - ENSDARG00000041232
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RPS29ENSGALG00000012229Gallus gallus
 RPS29ENSG00000213741Homo sapiens
 Rps29ENSMUSG00000034892Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001209  Ribosomal protein S14
 IPR018271  Ribosomal protein S14, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001525 angiogenesis IMP
 biological_processGO:0001570 vasculogenesis IMP
 biological_processGO:0006412 translation IEA
 biological_processGO:0030218 erythrocyte differentiation IMP
 biological_processGO:0043009 chordate embryonic development IMP
 biological_processGO:0048821 erythrocyte development IMP
 biological_processGO:0051726 regulation of cell cycle IMP
 biological_processGO:0060218 hematopoietic stem cell differentiation IMP
 biological_processGO:0072332 intrinsic apoptotic signaling pathway by p53 class mediator IMP
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0022627 cytosolic small ribosomal subunit IBA
 molecular_functionGO:0003735 structural constituent of ribosome IBA
 molecular_functionGO:0008270 zinc ion binding IBA


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
SRP-dependent cotranslational protein targeting to membrane
Major pathway of rRNA processing in the nucleolus and cytosol
Translation initiation complex formation
Formation of a pool of free 40S subunits
Formation of the ternary complex, and subsequently, the 43S complex
Ribosomal scanning and start codon recognition
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000006 ball ball increased size , abnormal
ball deformed , abnormal
Show

 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
Show

 ZFA:0000014 dorsal aorta dorsal aorta morphology , abnormal
Show

 ZFA:0000029 hindbrain hindbrain undulate , abnormal
Show

 ZFA:0000035 lens lens increased size , abnormal
Show

 ZFA:0000042 midbrain hindbrain boundary midbrain hindbrain boundary condensed , abnormal
midbrain hindbrain boundary aplastic , abnormal
Show

 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000084 yolk yolk circular , abnormal
yolk grey , abnormal
Show

 ZFA:0000100 cerebellum cerebellum aplastic , abnormal
Show

 ZFA:0000106 extension extension decreased thickness , abnormal
extension decreased length , abnormal
extension deformed , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0000108 fin fin aplastic , abnormal
Show

 ZFA:0000109 forebrain forebrain morphology , abnormal
Show

 ZFA:0000110 fourth ventricle fourth ventricle distended , abnormal
fourth ventricle increased size , abnormal
fourth ventricle opaque , abnormal
Show

 ZFA:0000112 gut gut hypoplastic , abnormal
Show

 ZFA:0000123 liver liver hypoplastic , abnormal
Show

 ZFA:0000135 notochord notochord bent , abnormal
Show

 ZFA:0000138 otic placode otic placode decreased size , abnormal
otic placode aplastic , abnormal
Show

 ZFA:0000142 peripheral nervous system peripheral nervous system chromosome amount , abnormal
Show

 ZFA:0000152 retina retina decreased size , abnormal
Show

 ZFA:0000445 optic tectum optic tectum increased size , abnormal
optic tectum opaque , abnormal
Show

 ZFA:0001077 thymus primordium thymus primordium common lymphoid progenitor absent , abnormal
Show

 ZFA:0001094 whole organism whole organism viability , abnormal
whole organism quality , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
Show

 ZFA:0001115 trunk trunk decreased thickness , abnormal
trunk necrotic , abnormal
Show

 ZFA:0001117 post-vent region post-vent region bent , abnormal
Show

 ZFA:0001285 intersegmental vessel intersegmental vessel aplastic , abnormal
Show

 ZFA:0005028 ventral wall of dorsal aorta ventral wall of dorsal aorta hematopoietic stem cell absent , abnormal
Show

 ZFA:0009256 nucleate erythrocyte nucleate erythrocyte hemoglobin complex decreased amount , abnormal
nucleate erythrocyte decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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