ENSDARG00000042902


Danio rerio

Features
Gene ID: ENSDARG00000042902
  
Biological name :afg1lb
  
Synonyms : afg1lb / AFG1 like ATPase b / Q5TYS0
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 20
Strand: -1
Band:
Gene start: 32337522
Gene end: 32405451
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000062977
Ensembl peptide - ENSDARP00000127343
NCBI entrez gene - 555926     See in Manteia.
RefSeq - NM_001025482
RefSeq Peptide - NP_001020653
swissprot - Q5TYS0
swissprot - U3JAS4
ZFIN ID - ZDB-GENE-041014-178
Ensembl - ENSDARG00000042902
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
afg1la / AFG1 like ATPase a / AFG1L* / Q3V384* / Q8WV93* / AFG1 like ATPase*ENSDARG0000001146650


Protein motifs (from Interpro)
Interpro ID Name
 IPR005654  ATPase, AFG1-like
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0003341 cilium movement IMP
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005737 cytoplasm IDA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005524 ATP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000001 Kupffer s vesicle Kupffers vesicle cilium movement decreased frequency , abnormal
Kupffers vesicle motile cilium decreased amount , abnormal
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 ZFA:0001094 whole organism whole organism anterior-posterior axis curved , abnormal
Show

 ZFA:0001261 ventricular system ventricular system hydrocephalic , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr