ENSDARG00000043209


Danio rerio

Features
Gene ID: ENSDARG00000043209
  
Biological name :nsun5
  
Synonyms : NOP2/Sun domain family, member 5 / nsun5
  
Possible biological names infered from orthology : NOP2/Sun RNA methyltransferase family member 5 / Probable 28S rRNA (cytosine-C(5))-methyltransferase / Q8K4F6 / Q96P11
  
Species: Danio rerio
  
Chr. number: 10
Strand: 1
Band:
Gene start: 35152928
Gene end: 35163612
  
Corresponding Affymetrix probe sets: Dr.2241.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000063417
Ensembl peptide - ENSDARP00000063424
NCBI entrez gene - 406690     See in Manteia.
RefSeq - NM_213285
RefSeq - XM_009305396
RefSeq Peptide - NP_998450
swissprot - F1RDI6
swissprot - A8KB55
swissprot - E7F5A3
ZFIN ID - ZDB-GENE-040426-2476
Ensembl - ENSDARG00000043209
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NSUN5ENSGALG00000000891Gallus gallus
 NSUN5ENSG00000130305Homo sapiens
 Nsun5ENSMUSG00000000916Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001678  SAM-dependent methyltransferase RsmB/NOP2-type
 IPR023267  RNA (C5-cytosine) methyltransferase
 IPR029063  S-adenosyl-L-methionine-dependent methyltransferase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0032259 methylation IEA
 biological_processGO:0070475 rRNA base methylation IBA
 cellular_componentGO:0005730 nucleolus IBA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0008168 methyltransferase activity IEA
 molecular_functionGO:0008173 RNA methyltransferase activity IBA
 molecular_functionGO:0008757 S-adenosylmethionine-dependent methyltransferase activity IBA
 molecular_functionGO:0016740 transferase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr