ENSDARG00000043899


Danio rerio

Features
Gene ID: ENSDARG00000043899
  
Biological name :psma6l
  
Synonyms : proteasome subunit alpha 6, like / psma6l
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 15
Strand: -1
Band:
Gene start: 47920629
Gene end: 47929455
  
Corresponding Affymetrix probe sets: Dr.10120.1.S1_at (Zebrafish Array)   NM_131795_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000064461
NCBI entrez gene - 83917     See in Manteia.
RefSeq - NM_131795
RefSeq Peptide - NP_571870
swissprot - Q6GQM3
ZFIN ID - ZDB-GENE-010502-2
Ensembl - ENSDARG00000043899
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
psma6a / proteasome subunit alpha 6a / PSMA6* / Q9QUM9* / P60900* / proteasome subunit alpha 6* / Proteasome subunit alpha type-6 *ENSDARG0000001939867
psma6b / proteasome subunit alpha 6b / PSMA6* / Q9QUM9* / P60900* / proteasome subunit alpha 6* / Proteasome subunit alpha type-6 *ENSDARG0000001396665


Protein motifs (from Interpro)
Interpro ID Name
 IPR000426  Proteasome alpha-subunit, N-terminal domain
 IPR001353  Proteasome, subunit alpha/beta
 IPR029055  Nucleophile aminohydrolases, N-terminal
 IPR034642  Proteasome subunit alpha6


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006508 proteolysis IEA
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process IEA
 biological_processGO:0051603 proteolysis involved in cellular protein catabolic process IEA
 cellular_componentGO:0000502 proteasome complex IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005839 proteasome core complex IEA
 cellular_componentGO:0019773 proteasome core complex, alpha-subunit complex IEA
 molecular_functionGO:0004175 endopeptidase activity IEA
 molecular_functionGO:0004298 threonine-type endopeptidase activity IEA
 molecular_functionGO:0008233 peptidase activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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