ENSDARG00000044304


Danio rerio

Features
Gene ID: ENSDARG00000044304
  
Biological name :prrc1
  
Synonyms : proline-rich coiled-coil 1 / prrc1 / Q5XJA3
  
Possible biological names infered from orthology : Protein PRRC1 / Q3UPH1 / Q96M27
  
Species: Danio rerio
  
Chr. number: 10
Strand: 1
Band:
Gene start: 16165533
Gene end: 16187800
  
Corresponding Affymetrix probe sets: Dr.17455.1.A1_at (Zebrafish Array)   NM_001007060_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000144236
Ensembl peptide - ENSDARP00000065044
NCBI entrez gene - 474330     See in Manteia.
RefSeq - NM_001007060
RefSeq Peptide - NP_001007061
swissprot - A0A286YAK9
swissprot - Q5XJA3
ZFIN ID - ZDB-GENE-041024-9
Ensembl - ENSDARG00000044304
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PRRC1ENSGALG00000014703Gallus gallus
 PRRC1ENSG00000164244Homo sapiens
 Prrc1ENSMUSG00000024594Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR026533  Non-canonical purine NTP phosphatase/PRRC1
 IPR026534  Protein PRRC1
 IPR029001  Inosine triphosphate pyrophosphatase-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001757 somite specification IMP
 biological_processGO:0010669 epithelial structure maintenance IMP
 biological_processGO:0034199 activation of protein kinase A activity IDA
 cellular_componentGO:0005737 cytoplasm IDA
 cellular_componentGO:0005794 Golgi apparatus IDA
 molecular_functionGO:0034237 protein kinase A regulatory subunit binding IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000155 somite somite morphology , abnormal
somite actin cytoskeleton disorganized , abnormal
somite laminin complex decreased amount , abnormal
somite epithelial cell morphology , abnormal
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 ZFA:0000473 trunk musculature trunk musculature disorganized , abnormal
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 ZFA:0001094 whole organism whole organism curved ventral , abnormal
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 ZFA:0009000 cell cell lamellipodium decreased amount , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr