ENSDARG00000051783


Danio rerio

Features
Gene ID: ENSDARG00000051783
  
Biological name :rplp0
  
Synonyms : ribosomal protein, large, P0 / rplp0
  
Possible biological names infered from orthology : P05388 / P14869 / ribosomal protein lateral stalk subunit P0
  
Species: Danio rerio
  
Chr. number: 5
Strand: -1
Band:
Gene start: 1950660
Gene end: 1963498
  
Corresponding Affymetrix probe sets: Dr.11308.1.S1_at (Zebrafish Array)   NM_131580_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000067953
Ensembl peptide - ENSDARP00000124178
NCBI entrez gene - 58101     See in Manteia.
RefSeq - NM_131580
RefSeq Peptide - NP_571655
swissprot - F8W4I2
swissprot - Q6P5K3
ZFIN ID - ZDB-GENE-000629-1
Ensembl - ENSDARG00000051783
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RPLP0ENSGALG00000023294Gallus gallus
 RPLP0ENSG00000089157Homo sapiens
 Rplp0ENSMUSG00000067274Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001790  Ribosomal protein L10P
 IPR030670  60S acidic ribosomal protein P0


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0042254 ribosome biogenesis IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005840 ribosome IEA


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
SRP-dependent cotranslational protein targeting to membrane
Major pathway of rRNA processing in the nucleolus and cytosol
Formation of a pool of free 40S subunits
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000035 lens lens decreased size , abnormal
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 ZFA:0000042 midbrain hindbrain boundary midbrain hindbrain boundary aplastic , abnormal
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 ZFA:0000100 cerebellum cerebellum decreased thickness , abnormal
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 ZFA:0000106 extension extension decreased thickness , abnormal
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 ZFA:0000108 fin fin aplastic , abnormal
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 ZFA:0000110 fourth ventricle fourth ventricle opaque , abnormal
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 ZFA:0000138 otic placode otic placode decreased size , abnormal
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 ZFA:0000152 retina retina decreased size , abnormal
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 ZFA:0000445 optic tectum optic tectum increased size , abnormal
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 ZFA:0001117 post-vent region post-vent region bent , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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