ENSDARG00000053318


Danio rerio

Features
Gene ID: ENSDARG00000053318
  
Biological name :lrrc6
  
Synonyms : leucine rich repeat containing 6 / lrrc6
  
Possible biological names infered from orthology : O88978 / Q86X45
  
Species: Danio rerio
  
Chr. number: 2
Strand: -1
Band:
Gene start: 43098237
Gene end: 43124747
  
Corresponding Affymetrix probe sets: Dr.6326.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000069830
Ensembl peptide - ENSDARP00000113887
Ensembl peptide - ENSDARP00000154577
NCBI entrez gene - 432388     See in Manteia.
RefSeq - NM_001002311
RefSeq Peptide - NP_001002311
swissprot - F1Q7C0
ZFIN ID - ZDB-GENE-040827-2
Ensembl - ENSDARG00000053318
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LRRC6ENSGALG00000042548Gallus gallus
 LRRC6ENSG00000129295Homo sapiens
 Lrrc6ENSMUSG00000022375Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001611  Leucine-rich repeat
 IPR008978  HSP20-like chaperone
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000001 Kupffer s vesicle Kupffers vesicle cilium functionality , abnormal
Show

 ZFA:0000022 floor plate floor plate cilium functionality , abnormal
Show

 ZFA:0000050 optic vesicle optic vesicle decreased size , abnormal
Show

 ZFA:0000051 otic vesicle otic vesicle morphology , abnormal
Show

 ZFA:0000077 tail bud tail bud increased length , abnormal
tail bud protruding , abnormal
Show

 ZFA:0000150 pronephric duct pronephric duct morphology , abnormal
pronephric duct increased diameter , abnormal
pronephric duct cilium decreased length , abnormal
pronephric duct cilium disoriented , abnormal
Show

 ZFA:0000151 pronephros pronephros cystic , abnormal
pronephros quality , abnormal
Show

 ZFA:0000155 somite somite increased width , abnormal
Show

 ZFA:0000255 paraxial mesoderm paraxial mesoderm increased width , abnormal
paraxial mesoderm mesodermal cell disoriented , abnormal
Show

 ZFA:0000330 cloacal chamber cloacal chamber cilium functionality , abnormal
Show

 ZFA:0000360 heart tube heart tube position , abnormal
Show

 ZFA:0000529 kidney kidney cystic , abnormal
Show

 ZFA:0000554 olfactory epithelium olfactory epithelium motile cilium decreased speed , abnormal
Show

 ZFA:0001094 whole organism whole organism curved ventral , abnormal
whole organism wholly dorsalized , abnormal
whole organism shape , abnormal
whole organism decreased length , abnormal
Show

 ZFA:0001115 trunk trunk curved ventral , abnormal
trunk curved , abnormal
trunk undulate , abnormal
Show

 ZFA:0001117 post-vent region post-vent region curved ventral , abnormal
post-vent region curved , abnormal
Show

 ZFA:0001135 neural tube neural tube cilium functionality , abnormal
Show

 ZFA:0001211 presumptive rhombomere 5 presumptive rhombomere 5 increased width , abnormal
Show

 ZFA:0001213 presumptive rhombomere 3 presumptive rhombomere 3 increased width , abnormal
Show

 ZFA:0001557 pronephric glomerulus pronephric glomerulus cystic , abnormal
pronephric glomerulus dilated , abnormal
pronephric glomerulus morphology , abnormal
pronephric glomerulus unfused from pronephric glomerulus , abnormal
pronephric glomerulus decreased thickness , abnormal
Show

 ZFA:0001558 pronephric tubule pronephric tubule cystic , abnormal
pronephric tubule cilium functionality , abnormal
pronephric tubule cilium decreased amount , abnormal
pronephric tubule distended , abnormal
Show

 ZFA:0001617 otolith otolith morphology , abnormal
Show

 ZFA:0001621 pronephric proximal straight tubule pronephric proximal straight tubule dilated , abnormal
Show

 ZFA:0001623 posterior pronephric duct posterior pronephric duct motile cilium decreased speed , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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