ENSDARG00000053365


Danio rerio

Features
Gene ID: ENSDARG00000053365
  
Biological name :rpl31
  
Synonyms : ribosomal protein L31 / rpl31
  
Possible biological names infered from orthology : P62899 / P62900
  
Species: Danio rerio
  
Chr. number: 9
Strand: -1
Band:
Gene start: 56225410
Gene end: 56232296
  
Corresponding Affymetrix probe sets: Dr.25737.2.S1_at (Zebrafish Array)   NM_001040052_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000123730
Ensembl peptide - ENSDARP00000124804
NCBI entrez gene - 677758     See in Manteia.
RefSeq - NM_001040052
RefSeq Peptide - NP_001035141
swissprot - Q24JV3
ZFIN ID - ZDB-GENE-060331-121
Ensembl - ENSDARG00000053365
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RPL31ENSGALG00000016775Gallus gallus
 RPL31ENSG00000071082Homo sapiens
 Rpl31ENSMUSG00000073702Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000054  Ribosomal protein L31e
 IPR020052  Ribosomal protein L31e, conserved site
 IPR023621  Ribosomal protein L31e domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002181 cytoplasmic translation IBA
 biological_processGO:0006412 translation IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0022625 cytosolic large ribosomal subunit IBA
 molecular_functionGO:0003735 structural constituent of ribosome IBA


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
SRP-dependent cotranslational protein targeting to membrane
Major pathway of rRNA processing in the nucleolus and cytosol
Formation of a pool of free 40S subunits
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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