ENSDARG00000053744


Danio rerio

Features
Gene ID: ENSDARG00000053744
  
Biological name :dcdc2b
  
Synonyms : dcdc2b / doublecortin domain containing 2B
  
Possible biological names infered from orthology : A2VCK2
  
Species: Danio rerio
  
Chr. number: 13
Strand: 1
Band:
Gene start: 33304187
Gene end: 33314758
  
Corresponding Affymetrix probe sets: Dr.14160.1.A1_at (Zebrafish Array)   NM_001037689_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000070307
Ensembl peptide - ENSDARP00000114527
NCBI entrez gene - 563259     See in Manteia.
RefSeq - NM_001037689
RefSeq Peptide - NP_001032778
swissprot - B8A4M5
swissprot - B8A4M4
ZFIN ID - ZDB-GENE-051113-124
Ensembl - ENSDARG00000053744
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 DCDC2BENSGALG00000046649Gallus gallus
 A2VCK2ENSG00000222046Homo sapiens
 Dcdc2bENSMUSG00000078552Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
DCDC2C / si:dkey-25g12.4 / A8MYV0* / Q9D1B8* / doublecortin domain containing 2C* / Doublecortin domain-containing protein 2C *ENSDARG0000010326429
rp1l1a / retinitis pigmentosa 1-like 1a / RP1L1* / Q8CGM2* / RP1 like 1* / retinitis pigmentosa 1 homolog like 1*ENSDARG0000008945819
rp1l1b / retinitis pigmentosa 1-like 1b / RP1L1* / Q8CGM2* / RP1 like 1* / retinitis pigmentosa 1 homolog like 1*ENSDARG0000008837715
rp1 / retinitis pigmentosa 1 (autosomal dominant) / P56716* / P56715* / Oxygen-regulated protein 1 * / RP1, axonemal microtubule associated*ENSDARG0000007768714


Protein motifs (from Interpro)
Interpro ID Name
 IPR003533  Doublecortin domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007605 sensory perception of sound IMP
 biological_processGO:0032474 otolith morphogenesis IMP
 biological_processGO:0035556 intracellular signal transduction IEA
 biological_processGO:0035675 neuromast hair cell development IMP
 biological_processGO:0048793 pronephros development IMP
 cellular_componentGO:0005622 intracellular IEA
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain hydrocephalic , abnormal
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 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000150 pronephric duct pronephric duct dilated , abnormal
pronephric duct cystic , abnormal
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 ZFA:0000217 inner ear inner ear altered number of otolith , abnormal
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 ZFA:0000428 saccule saccule hair cell decreased amount , abnormal
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 ZFA:0000431 semicircular canal semicircular canal hair cell decreased amount , abnormal
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 ZFA:0001117 post-vent region post-vent region curved ventral , abnormal
post-vent region kinked , abnormal
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 ZFA:0009366 hair cell hair cell decreased functionality , abnormal
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 ZFA:0009367 neuromast hair cell neuromast hair cell degenerate , abnormal
neuromast hair cell decreased amount , abnormal
neuromast hair cell stereocilium bundle morphology , abnormal
neuromast hair cell kinocilium morphology , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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