ENSDARG00000054355


Danio rerio

Features
Gene ID: ENSDARG00000054355
  
Biological name :dcaf7
  
Synonyms : dcaf7 / ddb1 and cul4 associated factor 7
  
Possible biological names infered from orthology : P61962 / P61963
  
Species: Danio rerio
  
Chr. number: 3
Strand: 1
Band:
Gene start: 31717261
Gene end: 31726949
  
Corresponding Affymetrix probe sets: Dr.3280.1.S1_at (Zebrafish Array)   NM_200069_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000058220
NCBI entrez gene - 337565     See in Manteia.
RefSeq - XM_005163996
RefSeq - NM_200069
RefSeq Peptide - NP_956363
swissprot - Q7T3E0
ZFIN ID - ZDB-GENE-030131-9511
Ensembl - ENSDARG00000054355
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 DCAF7ENSGALG00000000510Gallus gallus
 DCAF7ENSG00000136485Homo sapiens
 Dcaf7ENSMUSG00000049354Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0048703 embryonic viscerocranium morphogenesis IMP
 biological_processGO:0051216 cartilage development IMP
 cellular_componentGO:0005634 nucleus IDA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
Neddylation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000037 anatomical structure anatomical structure absent , abnormal
anatomical structure spatial pattern , ameliorated
anatomical structure decreased distribution , abnormal
Show

 ZFA:0000095 pharyngeal arch 3-7 skeleton pharyngeal arch 3-7 skeleton quality , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0000112 gut gut hypoplastic , abnormal
gut quality , abnormal
Show

 ZFA:0000114 heart heart physical object quality , abnormal
Show

 ZFA:0000123 liver liver hypoplastic , abnormal
liver quality , abnormal
Show

 ZFA:0000240 metapterygoid metapterygoid morphology , abnormal
Show

 ZFA:0000692 symplectic symplectic decreased size , abnormal
Show

 ZFA:0001114 head head circular , abnormal
head decreased size , abnormal
Show

 ZFA:0001205 Meckel s cartilage Meckels cartilage aplastic , abnormal
Meckels cartilage decreased size , abnormal
Meckels cartilage aplastic/hypoplastic , abnormal
Meckels cartilage amount , ameliorated
Meckels cartilage absent , abnormal
Meckels cartilage fused with palatoquadrate cartilage , abnormal
Meckels cartilage hypoplastic , abnormal
Show

 ZFA:0001227 mandibular arch skeleton mandibular arch skeleton aplastic , abnormal
mandibular arch skeleton cartilaginous joint morphology , abnormal
mandibular arch skeleton morphology , abnormal
mandibular arch skeleton morphology , ameliorated
Show

 ZFA:0001276 pharyngeal arch 2 skeleton pharyngeal arch 2 skeleton aplastic , abnormal
Show

 ZFA:0001399 palatoquadrate cartilage palatoquadrate cartilage aplastic , abnormal
palatoquadrate cartilage decreased size , abnormal
palatoquadrate cartilage aplastic/hypoplastic , abnormal
palatoquadrate cartilage size , ameliorated
palatoquadrate cartilage hypoplastic , abnormal
Show

 ZFA:0001400 ceratohyal cartilage ceratohyal cartilage aplastic , abnormal
Show

 ZFA:0001439 anatomical system anatomical system quality , abnormal
Show

 ZFA:0001612 pharyngeal arch 1 pharyngeal arch 1 spatial pattern , ameliorated
pharyngeal arch 1 anterior region decreased distribution , abnormal
pharyngeal arch 1 cranial neural crest decreased distribution , abnormal
pharyngeal arch 1 ventral region mislocalised , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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