ENSDARG00000055185


Danio rerio

Features
Gene ID: ENSDARG00000055185
  
Biological name :tm4sf5
  
Synonyms : tm4sf5 / transmembrane 4 L six family member 5
  
Possible biological names infered from orthology : O14894 / transmembrane 4 superfamily member 5
  
Species: Danio rerio
  
Chr. number: 7
Strand: 1
Band:
Gene start: 21841037
Gene end: 21848205
  
Corresponding Affymetrix probe sets: Dr.22137.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000071970
NCBI entrez gene - 436645     See in Manteia.
RefSeq - NM_001002372
RefSeq Peptide - NP_001002372
swissprot - Q6DHT3
ZFIN ID - ZDB-GENE-040718-65
Ensembl - ENSDARG00000055185
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 O14894ENSG00000142484Homo sapiens
 Tm4sf5ENSMUSG00000018919Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CABZ01033205.1 / Danio rerio uncharacterized LOC100002960 (LOC100002960), mRNA.ENSDARG0000009094341
si:ch211-137i24.10ENSDARG0000005770641
tm4sf18 / transmembrane 4 L six family member 18 / Q64302* / Q96CE8* / TM4SF1* / P30408* / transmembrane 4 L six family member 1* / Mus musculus transmembrane 4 superfamily member 1 (Tm4sf1...ENSDARG0000006066839
tm4sf4 / transmembrane 4 L six family member 4 / P48230* / transmembrane 4 superfamily member 4*ENSDARG0000004074739
zgc:172079ENSDARG0000005676238
zgc:172079ENSDARG0000010564438
TM4SF19 / si:dkey-83h2.3 / Q96DZ7* / TM4SF19-TCTEX1D2* / transmembrane 4 L six family member 19* / TM4SF19-TCTEX1D2 readthrough (NMD candidate)*ENSDARG0000010037827


Protein motifs (from Interpro)
Interpro ID Name
 IPR008661  L6 membrane


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0048741 skeletal muscle fiber development IMP
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IBA
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000088 YSL YSL mislocalised , abnormal
Show

 ZFA:0000155 somite somite slow muscle cell decreased amount , abnormal
somite fast muscle cell decreased amount , abnormal
Show

 ZFA:0001086 muscle pioneer muscle pioneer spatial pattern , abnormal
muscle pioneer disorganized , abnormal
muscle pioneer decreased distribution , abnormal
Show

 ZFA:0001094 whole organism whole organism decreased length , abnormal
Show

 ZFA:0001114 head head decreased distribution , abnormal
head decreased size , abnormal
Show

 ZFA:0001115 trunk trunk decreased distribution , abnormal
trunk curved , abnormal
Show

 ZFA:0001462 somite border somite border hypoplastic , abnormal
somite border incomplete structure , abnormal
Show

 ZFA:0001613 pharyngeal arch 3-7 pharyngeal arch 3-7 decreased distribution , abnormal
Show

 ZFA:0009116 slow muscle cell slow muscle cell morphology , abnormal
slow muscle cell spatial pattern , abnormal
slow muscle cell decreased amount , abnormal
Show

 ZFA:0009117 fast muscle cell fast muscle cell morphology , abnormal
fast muscle cell mislocalised , abnormal
fast muscle cell decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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