ENSDARG00000055653


Danio rerio

Features
Gene ID: ENSDARG00000055653
  
Biological name :nubp2
  
Synonyms : nubp2 / nucleotide binding protein 2 (MinD homolog, E. coli)
  
Possible biological names infered from orthology : Mus musculus nucleotide binding protein 2 (Nubp2), transcript variant 2, mRNA. / nucleotide binding protein 2 / Q9R061 / Q9Y5Y2
  
Species: Danio rerio
  
Chr. number: 24
Strand: -1
Band:
Gene start: 39178348
Gene end: 39186185
  
Corresponding Affymetrix probe sets: Dr.5714.1.S1_at (Zebrafish Array)   NM_001037114_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000112190
Ensembl peptide - ENSDARP00000148775
NCBI entrez gene - 641290     See in Manteia.
RefSeq - NM_001037114
RefSeq - NM_001312901
RefSeq Peptide - NP_001032191
RefSeq Peptide - NP_001299830
swissprot - F1REW2
ZFIN ID - ZDB-GENE-051023-10
Ensembl - ENSDARG00000055653
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NUBP2ENSGALG00000002316Gallus gallus
 NUBP2ENSG00000095906Homo sapiens
 Nubp2ENSMUSG00000039183Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR019591  Mrp/NBP35 ATP-binding protein
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR028600  Cytosolic Fe-S cluster assembly factor NUBP2/Cfd1, eukaryotes
 IPR033756  Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016226 iron-sulfur cluster assembly IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0051536 iron-sulfur cluster binding IEA
 molecular_functionGO:0051539 4 iron, 4 sulfur cluster binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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