ENSDARG00000056720


Danio rerio

Features
Gene ID: ENSDARG00000056720
  
Biological name :utp3
  
Synonyms : utp3 / UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae)
  
Possible biological names infered from orthology : Q9JI13 / Q9NQZ2 / UTP3, small subunit processome component
  
Species: Danio rerio
  
Chr. number: 11
Strand: -1
Band:
Gene start: 26370381
Gene end: 26375575
  
Corresponding Affymetrix probe sets: Dr.17306.1.A1_at (Zebrafish Array)   NM_001004595_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000073711
NCBI entrez gene - 447856     See in Manteia.
RefSeq - NM_001004595
RefSeq Peptide - NP_001004595
swissprot - Q66I02
ZFIN ID - ZDB-GENE-040912-163
Ensembl - ENSDARG00000056720
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000011553Gallus gallus
 UTP3ENSG00000132467Homo sapiens
 Utp3ENSMUSG00000070697Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007146  Sas10/Utp3/C1D
 IPR018972  Sas10 C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 cellular_componentGO:0005730 nucleolus IBA
 cellular_componentGO:0032040 small-subunit processome IBA
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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