ENSDARG00000056920


Danio rerio

Features
Gene ID: ENSDARG00000056920
  
Biological name :tmem88a
  
Synonyms : tmem88a / transmembrane protein 88 a
  
Possible biological names infered from orthology : Q6PEY1 / Q9D0N8 / TMEM88 / transmembrane protein 88
  
Species: Danio rerio
  
Chr. number: 10
Strand: 1
Band:
Gene start: 22771176
Gene end: 22780157
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000147072
Ensembl peptide - ENSDARP00000117977
Ensembl peptide - ENSDARP00000138237
Ensembl peptide - ENSDARP00000147231
NCBI entrez gene - 402969     See in Manteia.
RefSeq - NM_205670
RefSeq Peptide - NP_991233
swissprot - F1QYI4
swissprot - Q6P0G3
ZFIN ID - ZDB-GENE-040426-1808
Ensembl - ENSDARG00000056920
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q6PEY1ENSG00000167874Homo sapiens
 Q9D0N8ENSMUSG00000045377Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tmem88b / transmembrane protein 88 b / TMEM88* / Q6PEY1* / Q9D0N8* / transmembrane protein 88*ENSDARG0000006938868
CABZ01085140.1ENSDARG0000009807022


Protein motifs (from Interpro)
Interpro ID Name
 IPR033355  Transmembrane protein 88


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0030099 myeloid cell differentiation IMP
 biological_processGO:0060215 primitive hemopoiesis IMP
 biological_processGO:1901296 negative regulation of canonical Wnt signaling pathway involved in cardiac muscle cell fate commitment IMP
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000009 cardiac ventricle cardiac ventricle decreased length , abnormal
cardiac ventricle has fewer parts of type cardiac muscle cell , abnormal
Show

 ZFA:0000114 heart heart edematous , abnormal
heart morphology , abnormal
heart has fewer parts of type cardiac muscle cell , abnormal
Show

 ZFA:0000155 somite somite decreased amount , abnormal
Show

 ZFA:0000471 atrium atrium decreased length , abnormal
atrium has fewer parts of type cardiac muscle cell , abnormal
Show

 ZFA:0001094 whole organism whole organism lacks all parts of type blood , abnormal
whole organism decreased amount , abnormal
Show

 ZFA:0001115 trunk trunk decreased length , abnormal
trunk curved , abnormal
Show

 ZFA:0001458 cranial cartilage cranial cartilage decreased object quality , abnormal
Show

 ZFA:0005042 posterior lateral plate mesoderm posterior lateral plate mesoderm physical object quality , abnormal
Show

 ZFA:0005490 myocardial precursor myocardial precursor decreased amount , abnormal
myocardial precursor physical object quality , abnormal
Show

 ZFA:0009256 nucleate erythrocyte nucleate erythrocyte decreased amount , abnormal
Show

 ZFA:0009258 angioblastic mesenchymal cell angioblastic mesenchymal cell decreased amount , abnormal
Show

 ZFA:0009324 myeloid cell myeloid cell decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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