ENSDARG00000058467


Danio rerio

Features
Gene ID: ENSDARG00000058467
  
Biological name :prpf40a
  
Synonyms : PRP40 pre-mRNA processing factor 40 homolog A / prpf40a
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 9
Strand: 1
Band:
Gene start: 4675193
Gene end: 4721993
  
Corresponding Affymetrix probe sets: Dr.23930.1.S1_at (Zebrafish Array)   NM_198356_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000075769
NCBI entrez gene - 321555     See in Manteia.
RefSeq - NM_198356
RefSeq Peptide - NP_938170
swissprot - Q7ZUE4
ZFIN ID - ZDB-GENE-030131-274
Ensembl - ENSDARG00000058467
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CU929230.1 / O14776* / TCERG1* / transcription elongation regulator 1*ENSDARG0000003066519
tcerg1a / transcription elongation regulator 1a (CA150) / Q8CGF7* / TCERG1* / O14776* / transcription elongation regulator 1* / transcription elongation regulator 1 (CA150)*ENSDARG0000009882214
TCERG1L / transcription elongation regulator 1 like / Q5VWI1*ENSDARG000001099637


Protein motifs (from Interpro)
Interpro ID Name
 IPR001202  WW domain
 IPR002713  FF domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 cellular_componentGO:0005685 U1 snRNP IBA
 cellular_componentGO:0071004 U2-type prespliceosome IBA
 molecular_functionGO:0003723 RNA binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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