ENSDARG00000060112


Danio rerio

Features
Gene ID: ENSDARG00000060112
  
Biological name :sybu
  
Synonyms : sybu / syntabulin (syntaxin-interacting)
  
Possible biological names infered from orthology : Q8BHS8 / Q9NX95 / syntabulin
  
Species: Danio rerio
  
Chr. number: 16
Strand: 1
Band:
Gene start: 39146696
Gene end: 39168840
  
Corresponding Affymetrix probe sets: Dr.26340.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000078816
Ensembl peptide - ENSDARP00000107450
Ensembl peptide - ENSDARP00000104835
NCBI entrez gene - 568207     See in Manteia.
RefSeq - NM_001077173
RefSeq Peptide - NP_001070641
swissprot - E7EXJ7
swissprot - D3KVM2
ZFIN ID - ZDB-GENE-060929-1202
Ensembl - ENSDARG00000060112
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SYBUENSGALG00000036527Gallus gallus
 SYBUENSG00000147642Homo sapiens
 SybuENSMUSG00000022340Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
snphb / syntaphilin b / SNPH* / Q80U23* / O15079* / syntaphilin*ENSDARG0000007553927
snpha / syntaphilin a / SNPH* / Q80U23* / O15079* / syntaphilin*ENSDARG0000007848515


Protein motifs (from Interpro)
Interpro ID Name
 IPR026198  Syntabulin
 IPR028197  Syntaphilin/Syntabulin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0048263 determination of dorsal identity IMP
 biological_processGO:0060828 regulation of canonical Wnt signaling pathway IMP
 biological_processGO:2000053 regulation of Wnt signaling pathway involved in dorsal/ventral axis specification IMP
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0017075 syntaxin-1 binding IEA
 molecular_functionGO:0019894 kinesin binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001094 whole organism whole organism wholly ventralized , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr