ENSDARG00000060192


Danio rerio

Features
Gene ID: ENSDARG00000060192
  
Biological name :rpusd1
  
Synonyms : RNA pseudouridylate synthase domain containing 1 / rpusd1
  
Possible biological names infered from orthology : Q8VCZ8 / Q9UJJ7 / RNA pseudouridylate synthase domain-containing protein 1
  
Species: Danio rerio
  
Chr. number: 3
Strand: 1
Band:
Gene start: 35542067
Gene end: 35549478
  
Corresponding Affymetrix probe sets: Dr.5843.1.A1_at (Zebrafish Array)   NM_001076753_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000078984
Ensembl peptide - ENSDARP00000113540
NCBI entrez gene - 767786     See in Manteia.
RefSeq - NM_001076753
RefSeq Peptide - NP_001070221
swissprot - F1RAY7
ZFIN ID - ZDB-GENE-060929-444
Ensembl - ENSDARG00000060192
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RPUSD1ENSGALG00000005315Gallus gallus
 Q9UJJ7ENSG00000007376Homo sapiens
 Q8VCZ8ENSMUSG00000041199Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR006145  Pseudouridine synthase, RsuA/RluB/C/D/E/F
 IPR020103  Pseudouridine synthase, catalytic domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001522 pseudouridine synthesis IEA
 biological_processGO:0009451 RNA modification IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0009982 pseudouridine synthase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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