ENSDARG00000060879


Danio rerio

Features
Gene ID: ENSDARG00000060879
  
Biological name :slc28a1
  
Synonyms : slc28a1 / solute carrier family 28 (concentrative nucleoside transporter), member 1
  
Possible biological names infered from orthology : Gm14085 / Mus musculus solute carrier family 28 (sodium-coupled nucleoside transporter), member 2 (Slc28a2), transcript variant 2, mRNA. / O00337 / O43868 / O88627 / SLC28A2 / solute carrier family 28 member 1 / solute carrier family 28 member 2 / solute carrier family 28 (sodium-coupled nucleoside transporter), member 1
  
Species: Danio rerio
  
Chr. number: 18
Strand: 1
Band:
Gene start: 26829086
Gene end: 26850069
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000116583
Ensembl peptide - ENSDARP00000089127
NCBI entrez gene - 571287     See in Manteia.
RefSeq - NM_001081497
RefSeq Peptide - NP_001074966
swissprot - F1R1H1
swissprot - F1QKB7
ZFIN ID - ZDB-GENE-050419-117
Ensembl - ENSDARG00000060879
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000030863Gallus gallus
 O00337ENSG00000156222Homo sapiens
 O43868ENSG00000137860Homo sapiens
 Gm14085ENSMUSG00000079071Mus musculus
 O88627ENSMUSG00000027219Mus musculus
 Slc28a1ENSMUSG00000025726Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002668  Concentrative nucleoside transporter N-terminal domain
 IPR008276  Concentrative nucleoside transporter
 IPR011642  Nucleoside transporter/FeoB GTPase, Gate domain
 IPR011657  Concentrative nucleoside transporter C-terminal domain
 IPR018270  Concentrative nucleoside transporter, metazoan/bacterial
 IPR030212  Concentrative nucleoside transporter CNT1/CNT2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:1901642 nucleoside transmembrane transport IEA
 cellular_componentGO:0005887 integral component of plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005337 nucleoside transmembrane transporter activity IEA
 molecular_functionGO:0005415 nucleoside:sodium symporter activity IEA


Pathways (from Reactome)
Pathway description
Transport of nucleosides and free purine and pyrimidine bases across the plasma membrane


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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