ENSDARG00000060992


Danio rerio

Features
Gene ID: ENSDARG00000060992
  
Biological name :rpusd2
  
Synonyms : RNA pseudouridylate synthase domain containing 2 / rpusd2
  
Possible biological names infered from orthology : Q149F1 / Q8IZ73 / RNA pseudouridylate synthase domain-containing protein 2
  
Species: Danio rerio
  
Chr. number: 17
Strand: -1
Band:
Gene start: 31205064
Gene end: 31212420
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000080946
NCBI entrez gene - 565088     See in Manteia.
RefSeq - NM_001327917
RefSeq Peptide - NP_001314846
swissprot - E7FFJ5
ZFIN ID - ZDB-GENE-120411-43
Ensembl - ENSDARG00000060992
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RPUSD2ENSGALG00000041216Gallus gallus
 Q8IZ73ENSG00000166133Homo sapiens
 Q149F1ENSMUSG00000027324Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002942  RNA-binding S4 domain
 IPR006145  Pseudouridine synthase, RsuA/RluB/C/D/E/F
 IPR006224  Pseudouridine synthase, RluC/RluD, conserved site
 IPR006225  Pseudouridine synthase, RluC/RluD
 IPR020103  Pseudouridine synthase, catalytic domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000455 enzyme-directed rRNA pseudouridine synthesis IBA
 biological_processGO:0001522 pseudouridine synthesis IEA
 biological_processGO:0009451 RNA modification IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0009982 pseudouridine synthase activity IBA
 molecular_functionGO:0019239 deaminase activity IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr