ENSDARG00000070849


Danio rerio

Features
Gene ID: ENSDARG00000070849
  
Biological name :rps15
  
Synonyms : ribosomal protein S15 / rps15
  
Possible biological names infered from orthology : P62841
  
Species: Danio rerio
  
Chr. number: 11
Strand: 1
Band:
Gene start: 5926850
Gene end: 5931622
  
Corresponding Affymetrix probe sets: Dr.25264.2.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000095139
NCBI entrez gene - 337148     See in Manteia.
RefSeq - NM_001001819
RefSeq Peptide - NP_001001819
swissprot - Q6Q421
ZFIN ID - ZDB-GENE-030131-9092
Ensembl - ENSDARG00000070849
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RPS15ENSG00000115268Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002222  Ribosomal protein S19/S15
 IPR005713  Ribosomal protein S19A/S15e
 IPR020934  Ribosomal protein S19 conserved site
 IPR023575  Ribosomal protein S19, superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000028 ribosomal small subunit assembly IBA
 biological_processGO:0006412 translation IEA
 biological_processGO:0043009 chordate embryonic development IMP
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0015935 small ribosomal subunit IEA
 cellular_componentGO:0022627 cytosolic small ribosomal subunit IBA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003735 structural constituent of ribosome IBA


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
SRP-dependent cotranslational protein targeting to membrane
Major pathway of rRNA processing in the nucleolus and cytosol
Translation initiation complex formation
Formation of a pool of free 40S subunits
Formation of the ternary complex, and subsequently, the 43S complex
Ribosomal scanning and start codon recognition
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
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 ZFA:0000042 midbrain hindbrain boundary midbrain hindbrain boundary condensed , abnormal
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 ZFA:0000084 yolk yolk circular , abnormal
yolk grey , abnormal
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 ZFA:0000100 cerebellum cerebellum decreased thickness , abnormal
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 ZFA:0000106 extension extension decreased thickness , abnormal
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 ZFA:0000107 eye eye color , abnormal
eye decreased size , abnormal
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 ZFA:0000110 fourth ventricle fourth ventricle increased size , abnormal
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 ZFA:0000112 gut gut hypoplastic , abnormal
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 ZFA:0000138 otic placode otic placode decreased size , abnormal
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 ZFA:0000152 retina retina decreased size , abnormal
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 ZFA:0000445 optic tectum optic tectum increased size , abnormal
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 ZFA:0001094 whole organism whole organism decreased size , abnormal
whole organism quality , abnormal
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 ZFA:0001114 head head decreased size , abnormal
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 ZFA:0001115 trunk trunk decreased thickness , abnormal
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 ZFA:0001117 post-vent region post-vent region morphology , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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