ENSDARG00000071164


Danio rerio

Features
Gene ID: ENSDARG00000071164
  
Biological name :alkbh1
  
Synonyms : alkbh1 / alkB homolog 1, histone H2A dioxygenase
  
Possible biological names infered from orthology : Nucleic acid dioxygenase ALKBH1 / P0CB42 / Q13686
  
Species: Danio rerio
  
Chr. number: 17
Strand: 1
Band:
Gene start: 17764979
Gene end: 17775192
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000095783
Ensembl peptide - ENSDARP00000126383
NCBI entrez gene - 553720     See in Manteia.
RefSeq - NM_001020691
RefSeq Peptide - NP_001018527
swissprot - K7DY56
swissprot - E9QHS2
ZFIN ID - ZDB-GENE-050522-196
Ensembl - ENSDARG00000071164
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ALKBH1ENSGALG00000010485Gallus gallus
 ALKBH1ENSG00000100601Homo sapiens
 Alkbh1ENSMUSG00000079036Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR004574  Alkylated DNA repair protein AlkB
 IPR005123  Oxoglutarate/iron-dependent dioxygenase
 IPR027450  Alpha-ketoglutarate-dependent dioxygenase AlkB-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006281 DNA repair IBA
 biological_processGO:0035552 oxidative single-stranded DNA demethylation IBA
 biological_processGO:0042245 RNA repair IBA
 biological_processGO:0055114 oxidation-reduction process IEA
 cellular_componentGO:0005719 nuclear euchromatin IBA
 cellular_componentGO:0005739 mitochondrion IBA
 molecular_functionGO:0008198 ferrous iron binding IBA
 molecular_functionGO:0016491 oxidoreductase activity IEA
 molecular_functionGO:0043734 DNA-N1-methyladenine dioxygenase activity IBA
 molecular_functionGO:0070579 methylcytosine dioxygenase activity IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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