ENSDARG00000074307


Danio rerio

Features
Gene ID: ENSDARG00000074307
  
Biological name :rapgef5b
  
Synonyms : rapgef5b / Rap guanine nucleotide exchange factor (GEF) 5b
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 16
Strand: 1
Band:
Gene start: 19029297
Gene end: 19151800
  
Corresponding Affymetrix probe sets: Dr.15568.1.A1_at (Zebrafish Array)   Dr.22617.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000119810
Ensembl peptide - ENSDARP00000152599
Ensembl peptide - ENSDARP00000100132
Ensembl peptide - ENSDARP00000102028
NCBI entrez gene - 100073343     See in Manteia.
RefSeq - NM_001098779
RefSeq Peptide - NP_001092249
swissprot - E7FFI6
swissprot - F1QYH0
swissprot - F1R2N7
ZFIN ID - ZDB-GENE-061215-2
Ensembl - ENSDARG00000074307
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000591  DEP domain
 IPR000651  Ras-like guanine nucleotide exchange factor, N-terminal
 IPR001895  Ras guanine-nucleotide exchange factors catalytic domain
 IPR011991  ArsR-like helix-turn-helix domain
 IPR019804  Ras guanine-nucleotide exchange factor, conserved site
 IPR023578  Ras guanine nucleotide exchange factor domain superfamily
 IPR029071  Ubiquitin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007264 small GTPase mediated signal transduction IEA
 biological_processGO:0035556 intracellular signal transduction IEA
 biological_processGO:0065009 regulation of molecular function IEA
 cellular_componentGO:0005622 intracellular IEA
 molecular_functionGO:0005085 guanyl-nucleotide exchange factor activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr