ENSDARG00000074572


Danio rerio

Features
Gene ID: ENSDARG00000074572
  
Biological name :zgc:56304
  
Synonyms : zgc:56304
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 23
Strand: 1
Band:
Gene start: 44078929
Gene end: 44110756
  
Corresponding Affymetrix probe sets: Dr.5661.1.S1_at (Zebrafish Array)   NM_213374_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000027568
Ensembl peptide - ENSDARP00000092787
Ensembl peptide - ENSDARP00000151728
NCBI entrez gene - 406683     See in Manteia.
RefSeq - NM_213374
RefSeq - XM_021469775
RefSeq Peptide - NP_998539
swissprot - F1QAW2
swissprot - Q4V942
swissprot - Q502S1
swissprot - F1QJ44
ZFIN ID - ZDB-GENE-040426-2698
Ensembl - ENSDARG00000074572
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
g3bp2 / GTPase activating protein (SH3 domain) binding protein 2 / P97379* / Q9UN86* / G3BP stress granule assembly factor 2* / Mus musculus GTPase activating protein (SH3 domain) binding p...ENSDARG0000001479064
g3bp1 / GTPase activating protein (SH3 domain) binding protein 1 / P97855* / Q13283* / G3BP stress granule assembly factor 1* / Ras GTPase-activating protein-binding protein 1 *ENSDARG0000001774156


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR002075  Nuclear transport factor 2
 IPR018222  Nuclear transport factor 2, eukaryote
 IPR032710  NTF2-like domain superfamily
 IPR034376  G3BP2, RNA recognition motif
 IPR034377  Ras GTPase-activating protein-binding protein 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0034063 stress granule assembly IEA
 cellular_componentGO:0005829 cytosol IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003729 mRNA binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr