ENSDARG00000075113


Danio rerio

Features
Gene ID: ENSDARG00000075113
  
Biological name :nanog
  
Synonyms : nanog / nanog homeobox
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 24
Strand: 1
Band:
Gene start: 12835935
Gene end: 12842103
  
Corresponding Affymetrix probe sets: Dr.2175.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000102376
NCBI entrez gene - 792333     See in Manteia.
swissprot - A5JNG8
ZFIN ID - ZDB-GENE-030131-5486
Ensembl - ENSDARG00000075113
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001706 endoderm formation IMP
 biological_processGO:0006355 regulation of transcription, DNA-templated IGI
 biological_processGO:0007369 gastrulation IMP
 biological_processGO:0090504 epiboly IMP
 biological_processGO:1905936 regulation of germ cell proliferation IMP
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0042803 protein homodimerization activity IDA
 molecular_functionGO:0043565 sequence-specific DNA binding IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000018 epiblast epiblast increased thickness , abnormal
Show

 ZFA:0000038 margin margin constricted , abnormal
Show

 ZFA:0000084 yolk yolk broken , abnormal
Show

 ZFA:0000088 YSL YSL filamentous actin absent , abnormal
YSL morphology , abnormal
YSL nucleus decreased amount , abnormal
Show

 ZFA:0000093 blastomere blastomere displaced to blastoderm dorsal region, abnormal
Show

 ZFA:0001094 whole organism whole organism lacks parts or has fewer parts of type presumptive endoderm , abnormal
whole organism increased amount , abnormal
whole organism decreased amount , abnormal
whole organism ventral region decreased distribution , abnormal
Show

 ZFA:0009288 primordial germ cell primordial germ cell increased amount , abnormal
primordial germ cell mislocalised , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr