ENSDARG00000075805


Danio rerio

Features
Gene ID: ENSDARG00000075805
  
Biological name :si:dkey-219c3.2
  
Synonyms : si:dkey-219c3.2
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 25
Strand: 1
Band:
Gene start: 20272145
Gene end: 20355483
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000100701
NCBI entrez gene - 564106     See in Manteia.
swissprot - E7FFQ2
ZFIN ID - ZDB-GENE-090313-238
Ensembl - ENSDARG00000075805
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000040725Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
taf4a / TAF4A RNA polymerase II, TATA box binding protein (TBP)-associated factor / TAF4* / O00268* / TATA-box binding protein associated factor 4*ENSDARG0000006819231
taf4b / TAF4B RNA polymerase II, TATA box binding protein (TBP)-associated factor / Q92750* / G5E8Z2* / TATA-box binding protein associated factor 4b* / Transcription initiation factor TFII...ENSDARG0000007573228


Protein motifs (from Interpro)
Interpro ID Name
 IPR003894  TAFH/NHR1
 IPR007900  Transcription initiation factor TFIID component TAF4
 IPR009072  Histone-fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006352 DNA-templated transcription, initiation IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IBA
 biological_processGO:0051123 RNA polymerase II transcriptional preinitiation complex assembly IEA
 cellular_componentGO:0005669 transcription factor TFIID complex IBA
 molecular_functionGO:0001075 transcription factor activity, RNA polymerase II core promoter sequence-specific binding involved in preinitiation complex assembly IBA
 molecular_functionGO:0003677 DNA binding IBA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0003713 transcription coactivator activity IBA
 molecular_functionGO:0008134 transcription factor binding IBA
 molecular_functionGO:0046982 protein heterodimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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