ENSDARG00000078201


Danio rerio

Features
Gene ID: ENSDARG00000078201
  
Biological name :vcam1a
  
Synonyms : vascular cell adhesion molecule 1a / vcam1a
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 2
Strand: 1
Band:
Gene start: 7106837
Gene end: 7113911
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000122789
NCBI entrez gene - 100001105     See in Manteia.
swissprot - F6NRL9
ZFIN ID - ZDB-GENE-060503-172
Ensembl - ENSDARG00000078201
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
vcam1b / vascular cell adhesion molecule 1b / VCAM1* / P19320* / P29533* / vascular cell adhesion molecule 1*ENSDARG0000006247923
si:dkey-33i11.1 / CD22* / P20273* / CD22 molecule*ENSDARG0000005302717
si:dkey-24p1.1 / CD22* / P20273* / CD22 molecule*ENSDARG0000003909617
cd22 / cd22 molecule / P20273*ENSDARG0000005300513
si:ch211-1f22.3 / CD22* / P20273* / CD22 molecule*ENSDARG0000010153213
si:ch211-1f22.16 / CD22* / P20273* / CD22 molecule*ENSDARG0000009667012
si:ch211-1f22.11 / CD22* / P20273* / CD22 molecule*ENSDARG0000009452412
zmp:0000001289 / CD22* / P20273* / CD22 molecule*ENSDARG0000008989412
si:ch211-1f22.12 / CD22* / P20273* / CD22 molecule*ENSDARG0000009384512
si:dkey-27j5.10 / CD22* / P20273* / CD22 molecule*ENSDARG0000009415712
si:ch211-1f22.10 / CD22* / P20273* / CD22 molecule*ENSDARG0000009661912
si:ch211-1f22.8 / CD22* / P20273* / CD22 molecule*ENSDARG0000009650712
si:ch211-1f22.14 / CD22* / P20273* / CD22 molecule*ENSDARG0000006230912
si:ch211-152f2.3 / CD22* / P20273* / CD22 molecule*ENSDARG0000004344512
si:dkey-27j5.8 / si:dkey-27j5.10 / CD22* / P20273* / CD22 molecule*ENSDARG0000009653412
si:ch73-94k4.5 / CD22* / P20273* / CD22 molecule*ENSDARG0000009652311
si:ch211-1f22.13 / CD22* / P20273* / CD22 molecule*ENSDARG0000009662311
BX927068.2 / CD22* / P20273* / CD22 molecule*ENSDARG0000009662111
si:ch211-152f2.4 / CD22* / P20273* / CD22 molecule*ENSDARG0000009657411
zgc:171470 / CD22* / P20273* / CD22 molecule*ENSDARG0000005784411


Protein motifs (from Interpro)
Interpro ID Name
 IPR003597  Immunoglobulin C1-set
 IPR003598  Immunoglobulin subtype 2
 IPR003599  Immunoglobulin subtype
 IPR007110  Immunoglobulin-like domain
 IPR013768  Intercellular adhesion molecule, N-terminal
 IPR013783  Immunoglobulin-like fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001946 lymphangiogenesis IGI
 biological_processGO:0098609 cell-cell adhesion IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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