ENSDARG00000086075


Danio rerio

Features
Gene ID: ENSDARG00000086075
  
Biological name :ttc3
  
Synonyms : tetratricopeptide repeat domain 3 / ttc3
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 10
Strand: -1
Band:
Gene start: 81897
Gene end: 108952
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000114730
Ensembl peptide - ENSDARP00000117336
Ensembl peptide - ENSDARP00000109432
NCBI entrez gene - 100005214     See in Manteia.
RefSeq - XM_009305045
swissprot - E7EYR3
swissprot - F1QFP2
swissprot - F1QP67
ZFIN ID - ZDB-GENE-090313-3
Ensembl - ENSDARG00000086075
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:dkey-111e8.1 / Q8BFU3* / Q8ND24* / RNF214* / ring finger protein 214*ENSDARG000000940184
si:ch211-139a5.1 / TTC3* / P53804* / tetratricopeptide repeat domain 3*ENSDARG000000920182


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR013026  Tetratricopeptide repeat-containing domain
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR019734  Tetratricopeptide repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process IBA
 biological_processGO:0016567 protein ubiquitination IEA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr