ENSDARG00000091771


Danio rerio

Features
Gene ID: ENSDARG00000091771
  
Biological name :lysmd2
  
Synonyms : lysmd2 / LysM, putative peptidoglycan-binding, domain containing 2 / Q6DEF4
  
Possible biological names infered from orthology : LysM domain containing 2 / Q8IV50
  
Species: Danio rerio
  
Chr. number: 18
Strand: 1
Band:
Gene start: 39416357
Gene end: 39430956
  
Corresponding Affymetrix probe sets: Dr.7882.1.A1_at (Zebrafish Array)   Dr.7882.1.A1_a_at (Zebrafish Array)   Dr.7882.2.A1_x_at (Zebrafish Array)   NM_001003507_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000111919
Ensembl peptide - ENSDARP00000135111
Ensembl peptide - ENSDARP00000146072
NCBI entrez gene - 445113     See in Manteia.
RefSeq - NM_001003507
RefSeq Peptide - NP_001003507
swissprot - M1FQG2
swissprot - Q6DEF4
ZFIN ID - ZDB-GENE-040801-250
Ensembl - ENSDARG00000091771
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LYSMD2ENSGALG00000018976Gallus gallus
 LYSMD2ENSG00000140280Homo sapiens
 Lysmd2ENSMUSG00000032184Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
lysmd1 / LysM, putative peptidoglycan-binding, domain containing 1 / Q96S90* / Q9D0E3* / LysM domain containing 1* / LysM and putative peptidoglycan-binding domain-containing protein 1 *ENSDARG0000005478932


Protein motifs (from Interpro)
Interpro ID Name
 IPR018392  LysM domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr