ENSDARG00000099979


Danio rerio

Features
Gene ID: ENSDARG00000099979
  
Biological name :tgfbr3
  
Synonyms : tgfbr3 / transforming growth factor, beta receptor III
  
Possible biological names infered from orthology : Q03167 / transforming growth factor beta receptor 3
  
Species: Danio rerio
  
Chr. number: 6
Strand: 1
Band:
Gene start: 24398907
Gene end: 24598752
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000157580
Ensembl peptide - ENSDARP00000133083
NCBI entrez gene - 100332594     See in Manteia.
RefSeq - NM_001311172
RefSeq Peptide - NP_001298101
swissprot - E7FDB6
ZFIN ID - ZDB-GENE-120215-125
Ensembl - ENSDARG00000099979
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TGFBR3ENSGALG00000006038Gallus gallus
 Q03167ENSG00000069702Homo sapiens
 Tgfbr3ENSMUSG00000029287Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CU927890.1ENSDARG000001071309


Protein motifs (from Interpro)
Interpro ID Name
 IPR001507  Zona pellucida domain
 IPR017977  Zona pellucida domain, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002040 sprouting angiogenesis IMP
 biological_processGO:0061053 somite development IMP
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000037 anatomical structure anatomical structure decreased amount , abnormal
anatomical structure absent , abnormal
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 ZFA:0000135 notochord notochord absent , abnormal
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 ZFA:0000155 somite somite ventral region absent , abnormal
somite shape , abnormal
somite circular , abnormal
somite actin filament disorganized , abnormal
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 ZFA:0001058 caudal fin caudal fin curved , abnormal
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 ZFA:0001094 whole organism whole organism shape , abnormal
whole organism decreased size , abnormal
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 ZFA:0001285 intersegmental vessel intersegmental vessel sprouting angiogenesis process quality , abnormal
intersegmental vessel decreased size , abnormal
intersegmental vessel decreased amount , abnormal
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 ZFA:0001286 caudal vein plexus caudal vein plexus morphology , abnormal
caudal vein plexus sprouting angiogenesis process quality , abnormal
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 ZFA:0001462 somite border somite border blurry , abnormal
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 ZFA:0005025 dorsal longitudinal anastomotic vessel dorsal longitudinal anastomotic vessel blood vessel development decreased occurrence , abnormal
dorsal longitudinal anastomotic vessel aplastic , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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