ENSDARG00000100584


Danio rerio

Features
Gene ID: ENSDARG00000100584
  
Biological name :ccdc40
  
Synonyms : ccdc40 / coiled-coil domain containing 40 / Q56A40
  
Possible biological names infered from orthology : Coiled-coil domain-containing protein 40 / Q4G0X9 / Q8BI79
  
Species: Danio rerio
  
Chr. number: 6
Strand: 1
Band:
Gene start: 18251140
Gene end: 18292410
  
Corresponding Affymetrix probe sets: Dr.25001.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000139124
NCBI entrez gene - 568590     See in Manteia.
RefSeq - XM_009302358
RefSeq - NM_001271813
RefSeq Peptide - NP_001258742
swissprot - Q56A40
ZFIN ID - ZDB-GENE-060503-723
Ensembl - ENSDARG00000100584
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CCDC40ENSGALG00000007042Gallus gallus
 CCDC40ENSG00000141519Homo sapiens
 Ccdc40ENSMUSG00000039963Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR013956  E3 ubiquitin ligase Bre1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001947 heart looping IMP
 biological_processGO:0003143 embryonic heart tube morphogenesis IMP
 biological_processGO:0003146 heart jogging IMP
 biological_processGO:0003341 cilium movement IMP
 biological_processGO:0003351 epithelial cilium movement IMP
 biological_processGO:0007368 determination of left/right symmetry IMP
 biological_processGO:0035082 axoneme assembly IEA
 biological_processGO:0048793 pronephros development IMP
 biological_processGO:0060271 cilium assembly IMP
 biological_processGO:0060287 epithelial cilium movement involved in determination of left/right asymmetry IMP
 biological_processGO:0070286 axonemal dynein complex assembly ISS
 cellular_componentGO:0005737 cytoplasm ISS
 cellular_componentGO:0005929 cilium ISS
 cellular_componentGO:0005930 axoneme IBA
 cellular_componentGO:0042995 cell projection IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000001 Kupffer s vesicle Kupffers vesicle cilium decreased length , abnormal
Kupffers vesicle motile cilium decreased length , abnormal
Show

 ZFA:0000150 pronephric duct pronephric duct cilium decreased length , abnormal
pronephric duct cilium disoriented , abnormal
Show

 ZFA:0000151 pronephros pronephros quality , abnormal
pronephros cystic , abnormal
pronephros axonemal microtubule increased amount , abnormal
pronephros axonemal microtubule displaced , abnormal
pronephros axoneme structure , abnormal
Show

 ZFA:0000155 somite somite shape , abnormal
Show

 ZFA:0000529 kidney kidney cystic , abnormal
Show

 ZFA:0001094 whole organism whole organism shape , abnormal
whole organism lethal (sensu genetics) , abnormal
whole organism viability , abnormal
Show

 ZFA:0001115 trunk trunk curved ventral , abnormal
Show

 ZFA:0001117 post-vent region post-vent region curved , abnormal
post-vent region curved ventral , abnormal
post-vent region quality , abnormal
post-vent region increased curvature , abnormal
Show

 ZFA:0001161 pectoral fin pectoral fin quality , abnormal
Show

 ZFA:0001439 anatomical system anatomical system quality , abnormal
Show

 ZFA:0001557 pronephric glomerulus pronephric glomerulus decreased thickness , abnormal
pronephric glomerulus increased size , abnormal
Show

 ZFA:0001558 pronephric tubule pronephric tubule cilium decreased length , abnormal
pronephric tubule distended , abnormal
pronephric tubule dilated , abnormal
pronephric tubule increased diameter , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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