ENSDARG00000101441


Danio rerio

Features
Gene ID: ENSDARG00000101441
  
Biological name :lima1a
  
Synonyms : lima1a / LIM domain and actin binding 1a
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 23
Strand: 1
Band:
Gene start: 36460239
Gene end: 36488629
  
Corresponding Affymetrix probe sets: Dr.3763.1.S1_at (Zebrafish Array)   NM_131664_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000132530
NCBI entrez gene - 64000     See in Manteia.
RefSeq - NM_131664
RefSeq Peptide - NP_571739
swissprot - A0A0G2KJM7
ZFIN ID - ZDB-GENE-001120-1
Ensembl - ENSDARG00000101441
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
limd2 / LIM domain containing 2 / Q8BGB5* / Q9BT23* / Mus musculus LIM domain containing 2 (Limd2), transcript variant 3, mRNA.*ENSDARG000000780929
CR381686.5ENSDARG000001120158


Protein motifs (from Interpro)
Interpro ID Name
 IPR001781  Zinc finger, LIM-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0030835 negative regulation of actin filament depolymerization IEA
 biological_processGO:0051017 actin filament bundle assembly IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0051015 actin filament binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000029 hindbrain hindbrain absent , abnormal
hindbrain decreased amount , abnormal
Show

 ZFA:0000109 forebrain forebrain absent , abnormal
forebrain decreased amount , abnormal
Show

 ZFA:0000128 midbrain midbrain absent , abnormal
midbrain decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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