ENSDARG00000102308


Danio rerio

Features
Gene ID: ENSDARG00000102308
  
Biological name :ttc39c
  
Synonyms : Q1LXE6 / tetratricopeptide repeat domain 39C / ttc39c
  
Possible biological names infered from orthology : Q8N584
  
Species: Danio rerio
  
Chr. number: 22
Strand: -1
Band:
Gene start: 16350555
Gene end: 16377960
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000135033
Ensembl peptide - ENSDARP00000140059
NCBI entrez gene - 553591     See in Manteia.
swissprot - Q1LXE6
ZFIN ID - ZDB-GENE-050522-194
Ensembl - ENSDARG00000102308
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TTC39CENSGALG00000015064Gallus gallus
 Q8N584ENSG00000168234Homo sapiens
 Ttc39cENSMUSG00000024424Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ttc39a / tetratricopeptide repeat domain 39A / A2ACP1* / Q5SRH9*ENSDARG0000007412623
zgc:158403ENSDARG0000006275723
ttc39b / tetratricopeptide repeat domain 39BENSDARG0000010096214


Protein motifs (from Interpro)
Interpro ID Name
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR019412  Inclusion body clearance protein Iml2/Tetratricopeptide repeat protein 39


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0032474 otolith morphogenesis IMP
 biological_processGO:0060271 cilium assembly IMP
 biological_processGO:0061371 determination of heart left/right asymmetry IMP
 cellular_componentGO:0005575 cellular_component ND


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000001 Kupffer s vesicle Kupffers vesicle cilium decreased length , abnormal
Kupffers vesicle cilium decreased amount , abnormal
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 ZFA:0000008 brain brain hydrocephalic , abnormal
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 ZFA:0000150 pronephric duct pronephric duct motile cilium disorganized , abnormal
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 ZFA:0001115 trunk trunk curved , abnormal
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 ZFA:0001261 ventricular system ventricular system dilated , abnormal
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 ZFA:0001617 otolith otolith morphology , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr