ENSDARG00000102820


Danio rerio

Features
Gene ID: ENSDARG00000102820
  
Biological name :cib2
  
Synonyms : calcium and integrin binding family member 2 / cib2
  
Possible biological names infered from orthology : O75838 / Q9Z309
  
Species: Danio rerio
  
Chr. number: 25
Strand: -1
Band:
Gene start: 25666392
Gene end: 25736958
  
Corresponding Affymetrix probe sets: Dr.11202.1.A1_at (Zebrafish Array)   NM_200706_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000130315
NCBI entrez gene - 393679     See in Manteia.
RefSeq - NM_200706
RefSeq Peptide - NP_957000
swissprot - Q6PC72
ZFIN ID - ZDB-GENE-040426-1663
Ensembl - ENSDARG00000102820
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CIB2ENSGALG00000026674Gallus gallus
 CIB2ENSG00000136425Homo sapiens
 Cib2ENSMUSG00000037493Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cib3 / calcium and integrin binding family member 3 / Q96Q77*ENSDARG0000009107263
cib1 / calcium and integrin binding 1 (calmyrin) / Q99828* / Q9Z0F4* / calcium and integrin binding 1* / Calcium and integrin-binding protein 1 *ENSDARG0000010311838


Protein motifs (from Interpro)
Interpro ID Name
 IPR002048  EF-hand domain
 IPR011992  EF-hand domain pair
 IPR018247  EF-Hand 1, calcium-binding site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007229 integrin-mediated signaling pathway IEA
 biological_processGO:0007638 mechanosensory behavior IMP
 biological_processGO:0043010 camera-type eye development IMP
 biological_processGO:0048884 neuromast development IMP
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000105 epidermis epidermis keratinocyte morphology , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000114 heart heart edematous , abnormal
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 ZFA:0000243 neuromast neuromast absent , abnormal
neuromast action potential , abnormal
neuromast non-functional , abnormal
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 ZFA:0001094 whole organism whole organism decreased pigmentation , abnormal
whole organism unbalanced , abnormal
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 ZFA:0001117 post-vent region post-vent region curled , abnormal
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 ZFA:0009367 neuromast hair cell neuromast hair cell mislocalised , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr