ENSDARG00000104173


Danio rerio

Features
Gene ID: ENSDARG00000104173
  
Biological name :tufm
  
Synonyms : tufm / Tu translation elongation factor, mitochondrial
  
Possible biological names infered from orthology : P49411 / Q8BFR5
  
Species: Danio rerio
  
Chr. number: 3
Strand: -1
Band:
Gene start: 13582019
Gene end: 13599482
  
Corresponding Affymetrix probe sets: Dr.10133.1.A1_at (Zebrafish Array)   NM_001013505_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000134914
NCBI entrez gene - 541378     See in Manteia.
RefSeq - NM_001013505
RefSeq Peptide - NP_001013523
swissprot - Q5BJ17
ZFIN ID - ZDB-GENE-050320-73
Ensembl - ENSDARG00000104173
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TUFMENSG00000178952Homo sapiens
 TufmENSMUSG00000073838Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
eefsec / eukaryotic elongation factor, selenocysteine-tRNA-specific / P57772* / Q9JHW4* / Selenocysteine-specific elongation factor *ENSDARG0000000469622


Protein motifs (from Interpro)
Interpro ID Name
 IPR000795  Transcription factor, GTP-binding domain
 IPR004160  Translation elongation factor EFTu/EF1A, C-terminal
 IPR004161  Translation elongation factor EFTu-like, domain 2
 IPR004541  Translation elongation factor EFTu/EF1A, bacterial/organelle
 IPR009000  Translation protein, beta-barrel domain superfamily
 IPR009001  Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR031157  Tr-type G domain, conserved site
 IPR033720  Elongation factor Tu, domain 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006414 translational elongation IEA
 cellular_componentGO:0005622 intracellular IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003746 translation elongation factor activity IEA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005525 GTP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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