ENSDARG00000104227


Danio rerio

Features
Gene ID: ENSDARG00000104227
  
Biological name :nop10
  
Synonyms : nop10 / NOP10 ribonucleoprotein homolog (yeast) / Q6DRH5
  
Possible biological names infered from orthology : H/ACA ribonucleoprotein complex subunit 3 / NOP10 ribonucleoprotein / Q9CQS2 / Q9NPE3
  
Species: Danio rerio
  
Chr. number: 7
Strand: 1
Band:
Gene start: 1505507
Gene end: 1508912
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000132783
NCBI entrez gene - 445391     See in Manteia.
RefSeq - XM_021477470
RefSeq - NM_001003868
RefSeq - XM_021477469
RefSeq Peptide - NP_001003868
swissprot - Q6DRH5
ZFIN ID - ZDB-GENE-041007-4
Ensembl - ENSDARG00000104227
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NOP10ENSG00000182117Homo sapiens
 Nop10ENSMUSG00000027133Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007264  H/ACA ribonucleoprotein complex, subunit Nop10


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001522 pseudouridine synthesis IEA
 biological_processGO:0006364 rRNA processing IMP
 biological_processGO:0007004 telomere maintenance via telomerase IBA
 biological_processGO:0031118 rRNA pseudouridine synthesis IBA
 biological_processGO:0031120 snRNA pseudouridine synthesis IBA
 biological_processGO:0042254 ribosome biogenesis IEA
 biological_processGO:0060215 primitive hemopoiesis IMP
 biological_processGO:1904874 positive regulation of telomerase RNA localization to Cajal body IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0031429 box H/ACA snoRNP complex IBA
 cellular_componentGO:0072589 box H/ACA scaRNP complex IBA
 cellular_componentGO:0090661 box H/ACA telomerase RNP complex IBA
 molecular_functionGO:0030515 snoRNA binding IEA
 molecular_functionGO:0034513 box H/ACA snoRNA binding IBA
 molecular_functionGO:0070034 telomerase RNA binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000014 dorsal aorta dorsal aorta hematopoietic stem cell decreased amount , abnormal
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 ZFA:0000042 midbrain hindbrain boundary midbrain hindbrain boundary morphology , abnormal
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 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000076 swim bladder swim bladder uninflated , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000112 gut gut hypoplastic , abnormal
gut immature , abnormal
gut quality , abnormal
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 ZFA:0000114 heart heart quality , abnormal
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 ZFA:0000123 liver liver hypoplastic , abnormal
liver immature , abnormal
liver quality , abnormal
Show

 ZFA:0001094 whole organism whole organism dead , abnormal
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 ZFA:0001114 head head decreased size , abnormal
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 ZFA:0009256 nucleate erythrocyte nucleate erythrocyte decreased amount , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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