ENSDARG00000110357


Danio rerio

Features
Gene ID: ENSDARG00000110357
  
Biological name :irf1b
  
Synonyms : interferon regulatory factor 1b / irf1b
  
Possible biological names infered from orthology : Q6P6J9 / Q96J42 / thioredoxin domain containing 15 / TXNDC15
  
Species: Danio rerio
  
Chr. number: 21
Strand: -1
Band:
Gene start: 45838165
Gene end: 45840341
  
Corresponding Affymetrix probe sets: Dr.16773.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000004133
NCBI entrez gene - 100073339     See in Manteia.
RefSeq - NM_001098775
RefSeq Peptide - NP_001092245
swissprot - F1Q6E6
ZFIN ID - ZDB-GENE-041114-13
Ensembl - ENSDARG00000110357
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TXNDC15ENSGALG00000039781Gallus gallus
 Q96J42ENSG00000113621Homo sapiens
 Q6P6J9ENSMUSG00000021497Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR012336  Thioredoxin-like fold
 IPR013766  Thioredoxin domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0009615 response to virus IDA
 biological_processGO:0045454 cell redox homeostasis IEA
 biological_processGO:0050688 regulation of defense response to virus IDA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0044212 transcription regulatory region DNA binding IGI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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