ENSG00000042317


Homo sapiens

Features
Gene ID: ENSG00000042317
  
Biological name :SPATA7
  
Synonyms : Q9P0W8 / SPATA7 / spermatogenesis associated 7
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 14
Strand: 1
Band: q31.3
Gene start: 88384924
Gene end: 88470350
  
Corresponding Affymetrix probe sets: 219583_s_at (Human Genome U133 Plus 2.0 Array)   234929_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000452546
Ensembl peptide - ENSP00000452364
Ensembl peptide - ENSP00000452435
Ensembl peptide - ENSP00000045347
Ensembl peptide - ENSP00000348991
Ensembl peptide - ENSP00000377176
Ensembl peptide - ENSP00000450515
Ensembl peptide - ENSP00000450606
Ensembl peptide - ENSP00000450654
Ensembl peptide - ENSP00000450809
Ensembl peptide - ENSP00000450882
Ensembl peptide - ENSP00000451019
Ensembl peptide - ENSP00000451128
Ensembl peptide - ENSP00000451181
Ensembl peptide - ENSP00000451663
Ensembl peptide - ENSP00000451690
Ensembl peptide - ENSP00000452359
NCBI entrez gene - 55812     See in Manteia.
OMIM - 609868
RefSeq - XM_017021457
RefSeq - NM_018418
RefSeq - XM_005267851
RefSeq - XM_005267852
RefSeq - XM_005267854
RefSeq - XM_005267855
RefSeq - XM_006720204
RefSeq - XM_006720205
RefSeq - XM_011536951
RefSeq - XM_011536952
RefSeq - XM_011536953
RefSeq - XM_017021452
RefSeq - XM_017021453
RefSeq - XM_017021454
RefSeq - XM_017021455
RefSeq - XM_017021456
RefSeq - NM_001040428
RefSeq Peptide - NP_060888
RefSeq Peptide - NP_001035518
swissprot - G3V3D2
swissprot - G3V491
swissprot - G3V4A9
swissprot - G3V5H6
swissprot - G3V5N2
swissprot - G3V5V8
swissprot - H0YJ48
swissprot - H0YJ93
swissprot - V9HVY9
swissprot - G3V287
swissprot - G3V2E1
swissprot - Q9P0W8
swissprot - G3V2V4
Ensembl - ENSG00000042317
  
Related genetic diseases (OMIM): 604232 - Leber congenital amaurosis 3, 604232
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 spata7ENSDARG00000075898Danio rerio
 SPATA7ENSGALG00000010607Gallus gallus
 Q80VP2ENSMUSG00000021007Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR029357  Spermatogenesis-associated protein 7


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007601 visual perception IEA
 biological_processGO:0045494 photoreceptor cell maintenance ISS
 biological_processGO:0050896 response to stimulus IEA
 biological_processGO:1903546 protein localization to photoreceptor outer segment ISS
 biological_processGO:1903621 protein localization to photoreceptor connecting cilium ISS
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005739 mitochondrion IDA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005930 axoneme IDA
 cellular_componentGO:0015630 microtubule cytoskeleton IDA
 cellular_componentGO:0032391 photoreceptor connecting cilium ISS
 cellular_componentGO:0036064 ciliary basal body IDA
 cellular_componentGO:0042995 cell projection IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000035 Abnormality of the testis 
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 HP:0000135 Hypogonadism "Reduced function of the gonads (testes in males or ovaries in females)." [HPO:curators]
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 HP:0000365 Hearing loss 
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 HP:0000405 Hearing loss, conductive 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
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 HP:0000512 Abnormal electroretinogram "Any abnormality of the electrical responses of various cell types in the retina as measured by electroretinography." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000563 Keratoconus "A cone-shaped deformity of the cornea." [HPO:curators]
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 HP:0000572 Visual loss 
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 HP:0000602 Ophthalmoplegia 
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 HP:0000613 Photophobia "Excessive sensitivity to light with the sensation of discomfort or pain in the eyes due to exposure to bright light." [HPO:curators]
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 HP:0000618 Blindness 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000648 Optic atrophy 
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 HP:0000662 Night blindness 
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 HP:0000842 Hyperinsulinemia 
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 HP:0000987 Scarring 
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 HP:0001133 Constricted visual fields 
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 HP:0001141 Severe visual impairment 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
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 HP:0002084 Encephalocele 
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 HP:0002269 Neuronal migration disorder 
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 HP:0004374 Hemiplegia/hemiparesis "Loss of strength in the arm, leg, and sometimes face on one side of the body. Hemiplegia refers to a severe or complete loss of strength, whereas hemiparesis refers to a relatively mild loss of strength." [HPO:curators]
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 HP:0005978 Noninsulin-dependent diabetes mellitus 
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 HP:0006817 Cerebellar vermis aplasia/hypoplasia "Absence or underdevelopment of the cerebellar vermis." [HPO:curators]
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 HP:0007675 Progressive night blindness 
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 HP:0007703 Abnormal retinal pigmentation 
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 HP:0008046 Abnormality of the retinal vasculature 
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 HP:0008736 Hypoplasia of penis 
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 HP:0012795 Abnormality of the optic disc "A morphological abnormality of the optic disc, i.e., of the portion of the optic nerve clinically visible on fundoscopic examination." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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