ENSG00000047578


Homo sapiens

Features
Gene ID: ENSG00000047578
  
Biological name :KIAA0556
  
Synonyms : KIAA0556 / O60303
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 16
Strand: 1
Band: p12.1
Gene start: 27550133
Gene end: 27780369
  
Corresponding Affymetrix probe sets: 213185_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000483214
Ensembl peptide - ENSP00000261588
Ensembl peptide - ENSP00000454884
Ensembl peptide - ENSP00000455380
NCBI entrez gene - 23247     See in Manteia.
OMIM - 616650
RefSeq - XM_017023088
RefSeq - XM_011545775
RefSeq - XM_011545776
RefSeq - XM_017023085
RefSeq - XM_017023086
RefSeq - XM_017023087
RefSeq - NM_015202
RefSeq - XM_005255201
RefSeq - XM_005255202
RefSeq - XM_005255203
RefSeq - XM_005255208
RefSeq - XM_006721025
RefSeq - XM_011545773
RefSeq - XM_011545774
RefSeq Peptide - NP_056017
swissprot - H3BNJ6
swissprot - H3BPM2
swissprot - A0A087X098
swissprot - O60303
Ensembl - ENSG00000047578
  
Related genetic diseases (OMIM): 616784 - Joubert syndrome 26, 616784
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 si:dkey-161j23.5ENSDARG00000094441Danio rerio
 si:dkey-161j23.6ENSDARG00000092347Danio rerio
 si:dkey-161j23.7ENSDARG00000092882Danio rerio
 KIAA0556ENSGALG00000043363Gallus gallus
 Q8C753ENSMUSG00000032743Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR008979  Galactose-binding-like domain superfamily
 IPR026704  Protein KIAA0556
 IPR027859  Domain of unknown function DUF4457


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005615 extracellular space HDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0042995 cell projection IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000054 Micropenis 
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000202 Cleft lip/palate 
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 HP:0000238 Hydrocephalus 
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 HP:0000276 Long face 
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 HP:0000316 Hypertelorism 
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000426 Prominent nasal bridge 
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000612 Iris coloboma "A `coloboma` (HP:0000589) of the `iris` (FMA:58235)." [HPO:probinson]
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000657 Oculomotor apraxia 
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 HP:0000824 Growth hormone deficiency "Insufficient production of growth hormone, which is produced by the anterior pituitary gland." [HPO:curators]
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 HP:0000864 Abnormality of the hypothalamus-pituitary axis 
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 HP:0000871 Panhypopituitarism "A pituitary functional deficit affecting all the anterior pituitary hormones (growth hormone, thyroid-stimulating hormone, follicle-stimulating hormone, luteinizing hormone, adrenocorticotropic hormone, and prolactin)." [HPO:curators]
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 HP:0001161 Polydactyly (hands) 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001288 Gait disturbance "The term gait disturbance can refer to any disruption of the ability to walk. In general, this can refer to neurological diseases but also fractures or other sources of pain that is triggered upon walking. However, in the current context gait disturbance refers to difficulty walking on the basis of a neurological or muscular disease." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001320 Cerebellar vermis hypoplasia 
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 HP:0001321 Cerebellar hypoplasia 
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 HP:0001337 Tremor "An unintentional, oscillating to-and-fro muscle movement." [HPO:curators]
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 HP:0001696 Situs inversus "A left-right reversal (or "mirror reflection") of the anatomical location of the major thoracic and abdominal organs." [HPO:curators]
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 HP:0001829 Polydactyly (feet) 
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 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
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 HP:0002084 Encephalocele 
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 HP:0002104 Apnea "Lack of breathing with no movement of the respiratory muscles and no exchange of air in the lungs. This term refers to a disposition to have recurrent episodes of apnea rather than to a single event." [HPO:curators]
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 HP:0002126 Polymicrogyria "A congenital abnormality of the cerebral hemisphere characterized by an excessive number of small gyri (convolutions) on the surface of the brain." [HPO:curators]
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 HP:0002251 Congenital megacolon "An abnormality resulting from a lack of intestinal ganglion cells (i.e., an aganglionic section of bowel) that results in bowel obstruction with enlargement of the colon." [HPO:curators]
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 HP:0002553 Arched eyebrows 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002788 Recurrent upper respiratory tract infections 
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 HP:0002876 Tachypnea, episodic 
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 HP:0003312 Abnormal form of the vertebral bodies 
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 HP:0003577 Onset at birth 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004422 Biparietal narrowing "A narrowing of the biparietal diameter (i.e., of the transverse distance between the protuberances of the two parietal bones of the skull)." [HPO:curators]
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 HP:0007068 Inferior vermis hypoplasia 
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 HP:0007370 Aplasia/Hypoplasia of the corpus callosum "Absence or underdevelopment of the corpus callosum." [HPO:curators]
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 HP:0008872 Feeding problems in infancy 
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 HP:0011787 Central hypothyroidism "A type of hypothyroidism due to an insufficient stimulation of an otherwise normal thyroid gland. Central hypothyroidism is caused by either pituitary (secondary hypothyroidism) or hypothalamic (tertiary hypothyroidism) defects." [DDD:spark, pmid:18415684]
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 HP:0410030 Cleft lip "A gap in the lip or lips." []
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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