ENSG00000065000


Homo sapiens

Features
Gene ID: ENSG00000065000
  
Biological name :AP3D1
  
Synonyms : adaptor related protein complex 3 delta 1 subunit / AP3D1 / O14617
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 19
Strand: -1
Band: p13.3
Gene start: 2100988
Gene end: 2164468
  
Corresponding Affymetrix probe sets: 206592_s_at (Human Genome U133 Plus 2.0 Array)   208710_s_at (Human Genome U133 Plus 2.0 Array)   210974_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000494100
Ensembl peptide - ENSP00000494972
Ensembl peptide - ENSP00000495274
Ensembl peptide - ENSP00000344055
Ensembl peptide - ENSP00000347416
Ensembl peptide - ENSP00000466267
Ensembl peptide - ENSP00000468449
Ensembl peptide - ENSP00000481961
Ensembl peptide - ENSP00000493531
NCBI entrez gene - 8943     See in Manteia.
OMIM - 607246
RefSeq - NM_003938
RefSeq - XM_017027422
RefSeq - XM_006722932
RefSeq - NM_001261826
RefSeq Peptide - NP_001248755
RefSeq Peptide - NP_003929
swissprot - K7ELX8
swissprot - O14617
swissprot - K7ERW8
swissprot - A0A087WYN6
Ensembl - ENSG00000065000
  
Related genetic diseases (OMIM): 617050 - ?Hermansky-Pudlak syndrome 10, 617050
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ap3d1ENSDARG00000071424Danio rerio
 ENSGALG00000000996Gallus gallus
 Ap3d1ENSMUSG00000020198Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002553  Clathrin/coatomer adaptor, adaptin-like, N-terminal
 IPR011989  Armadillo-like helical
 IPR016024  Armadillo-type fold
 IPR017105  Adaptor protein complex AP-3, delta subunit


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006726 eye pigment biosynthetic process TAS
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0008089 anterograde axonal transport IMP
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0016182 synaptic vesicle budding from endosome IDA
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0019882 antigen processing and presentation IMP
 biological_processGO:0032438 melanosome organization IC
 biological_processGO:0033365 protein localization to organelle IMP
 biological_processGO:0035646 endosome to melanosome transport IMP
 biological_processGO:0048007 antigen processing and presentation, exogenous lipid antigen via MHC class Ib IMP
 biological_processGO:0048490 anterograde synaptic vesicle transport IMP
 biological_processGO:0048499 synaptic vesicle membrane organization IMP
 biological_processGO:0051138 positive regulation of NK T cell differentiation IMP
 biological_processGO:0061088 regulation of sequestering of zinc ion IMP
 biological_processGO:0072657 protein localization to membrane IMP
 biological_processGO:0098943 neurotransmitter receptor transport, postsynaptic endosome to lysosome IMP
 cellular_componentGO:0000139 Golgi membrane IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005765 lysosomal membrane HDA
 cellular_componentGO:0005794 Golgi apparatus TAS
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0010008 endosome membrane IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030117 membrane coat IEA
 cellular_componentGO:0030123 AP-3 adaptor complex IEA
 cellular_componentGO:0030424 axon IDA
 cellular_componentGO:0043195 terminal bouton IDA
 cellular_componentGO:0098794 postsynapse IEA
 cellular_componentGO:0098830 presynaptic endosome IDA
 cellular_componentGO:1904115 axon cytoplasm IEA
 molecular_functionGO:0005215 transporter activity TAS
 molecular_functionGO:0005488 binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000278 Retrognathia 
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 HP:0000319 Flat philtrum 
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000400 Large ears 
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 HP:0000483 Astigmatism 
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000505 Impaired vision 
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 HP:0000601 Hypotelorism 
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 HP:0000613 Photophobia "Excessive sensitivity to light with the sensation of discomfort or pain in the eyes due to exposure to bright light." [HPO:curators]
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 HP:0000616 Miosis 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000662 Night blindness 
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 HP:0001107 Ocular albinism 
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001332 Dystonia "An abnormally increased muscular tone that causes fixed abnormal postures. There is a slow, intermittent twisting motion that leads to exaggerated turning and posture of the extremities and trunk." [HPO:curators]
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 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
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 HP:0001875 Neutropenia 
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 HP:0002059 Cerebral atrophy 
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 HP:0002069 Generalized tonic-clonic seizures "Generalized tonic-clonic seizures are `generalized seizures` (HP:0002197) in which the patient suddenly loses conciousness, the eyes roll back, and the entire body musculature undergoes tonic contractions. In the clonic phase of the seizure, there are rhythmic contractions of the musculature alternating with relaxation of all muscle groups. Loss of sphincter control during the seizure is common. This form of seizure was formerly commonly called grand mal seizure." [HPO:curators]
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 HP:0002123 Myoclonic seizures "Myoclonic seizures are sudden, brief losses of consciousness and postural tone not associated with tonic muscular contractions. Myoclonic seizures may involve one body part or the entire body. In the latter case, the myoclonic seizure is accompanied by a violent fall but not by loss of consciousness." [HPO:curators]
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 HP:0002205 Recurrent respiratory infections 
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002353 EEG abnormalities "Abnormality observed by electroencephalogram (EEG), which is used to record of the brain s spontaneous electrical activity from multiple electrodes placed on the scalp." [HPO:curators]
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 HP:0002721 Immunodeficiency 
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 HP:0003593 Early onset 
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 HP:0006530 Interstitial pulmonary disease 
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 HP:0008059 Aplasia/Hypoplasia of the macula 
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 HP:0008936 Muscular hypotonia of the trunk "Muscular hypotonia (abnormally low muscle tone) affecting the musculature of the trunk." [HPO:curators]
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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 HP:0012448 Delayed myelination "`Delayed` (PATO:0000502) `myelination` (GO:0042552)." [ORCID:0000-0001-5208-3432]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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