ENSG00000091262


Homo sapiens

Features
Gene ID: ENSG00000091262
  
Biological name :ABCC6
  
Synonyms : ABCC6 / ATP binding cassette subfamily C member 6 / O95255
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 16
Strand: -1
Band: p13.11
Gene start: 16148928
Gene end: 16223522
  
Corresponding Affymetrix probe sets: 208480_s_at (Human Genome U133 Plus 2.0 Array)   214033_at (Human Genome U133 Plus 2.0 Array)   215559_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000483331
Ensembl peptide - ENSP00000459243
Ensembl peptide - ENSP00000461686
Ensembl peptide - ENSP00000492197
Ensembl peptide - ENSP00000205557
Ensembl peptide - ENSP00000405002
NCBI entrez gene - 368     See in Manteia.
NCBI entrez gene - 105369239     See in Manteia.
OMIM - 603234
RefSeq - XM_017023214
RefSeq - XM_011522480
RefSeq - XM_011522481
RefSeq - XM_011522482
RefSeq - XM_017023212
RefSeq - XM_017023213
RefSeq - NM_001079528
RefSeq - NM_001171
RefSeq - XM_011522479
RefSeq Peptide - NP_001072996
RefSeq Peptide - NP_001162
swissprot - I3L1Z6
swissprot - O95255
swissprot - A0A1W2PQX7
Ensembl - ENSG00000091262
  
Related genetic diseases (OMIM): 177850 - Pseudoxanthoma elasticum, forme fruste, 177850
  264800 - Pseudoxanthoma elasticum, 264800
  614473 - Arterial calcification, generalized, of infancy, 2, 614473
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Abcc6ENSMUSG00000030834Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ABCC10 / Q5T3U5 / ATP binding cassette subfamily C member 10ENSG0000012457429


Protein motifs (from Interpro)
Interpro ID Name
 IPR003439  ABC transporter-like
 IPR003593  AAA+ ATPase domain
 IPR005292  Multi drug resistance-associated protein
 IPR011527  ABC transporter type 1, transmembrane domain
 IPR017871  ABC transporter, conserved site
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR030239  Multidrug resistance-associated protein 6
 IPR036640  ABC transporter type 1, transmembrane domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007601 visual perception IEA
 biological_processGO:0042493 response to drug TAS
 biological_processGO:0050896 response to stimulus IEA
 biological_processGO:0055085 transmembrane transport TAS
 biological_processGO:0099133 ATP hydrolysis coupled anion transmembrane transport IEA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane IEA
 cellular_componentGO:0005886 plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0016323 basolateral plasma membrane IEA
 cellular_componentGO:0016324 apical plasma membrane IEA
 cellular_componentGO:0016328 lateral plasma membrane IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005215 transporter activity TAS
 molecular_functionGO:0005524 ATP binding TAS
 molecular_functionGO:0016887 ATPase activity IEA
 molecular_functionGO:0022857 transmembrane transporter activity IEA
 molecular_functionGO:0042626 ATPase activity, coupled to transmembrane movement of substances TAS
 molecular_functionGO:0043225 ATPase-coupled anion transmembrane transporter activity TAS


Pathways (from Reactome)
Pathway description
ABC-family proteins mediated transport
Defective ABCC6 causes pseudoxanthoma elasticum (PXE)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000083 Renal failure 
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 HP:0000121 Nephrocalcinosis 
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 HP:0000153 Abnormality of the mouth "An abnormality of the `mouth` (FMA:49184)." [HPO:probinson]
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000474 Excess nuchal skin 
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 HP:0000488 Retinopathy 
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 HP:0000505 Impaired vision 
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 HP:0000545 Myopia 
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 HP:0000573 Retinal hemorrhage 
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 HP:0000592 Blue sclerae 
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 HP:0000608 Macular degeneration 
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 HP:0000765 Abnormality of the thorax "Any abnormality of the thorax (the region of the body formed by the sternum, the thoracic vertebrae and the ribs)." [HPO:curators]
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 HP:0000766 Abnormality of the sternum 
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 HP:0000821 Hypothyroidism 
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 HP:0000822 Hypertension "High blood pressure." [HPO:curators]
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 HP:0000974 Hyperextensible skin 
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 HP:0000978 Ecchymoses 
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 HP:0000988 Skin rash 
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 HP:0000989 Pruritus "Pruritus is an itch or a sensation that makes a person want to scratch. This term refers to an abnormally increased disposition to experience pruritus." [HPO:curators]
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 HP:0001012 Lipomas "The presence of multiple lipomas (a type of benign tissue made of fatty tissue)." [HPO:curators]
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 HP:0001034 Hyperpigmented macules 
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 HP:0001061 Acne 
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 HP:0001065 Striae distensae "Thinned, erythematous, depressed bands of atrophic skin. Initially, striae appear as flattened and thinned, pinkish linear regions of the skin. Striae tend to enlarge in length and become reddish or purplish. Later, striae tend to appear as white, depressed bands that are parallel to the lines of skin tension. Striae distensae occur most often in areas that have been subject to distension such as the lower back, buttocks, thighs, breast, abdomen, and shoulders." [HPO:curators]
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 HP:0001102 Angioid streaks 
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 HP:0001297 Stroke 
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 HP:0001342 Cerebral hemorrhage "A cerebral hemorrhage (or intracerebral hemorrhage, ICH), is a type of intracranial hemorrhage that occurs within the brain tissue itself." [HPO:curators]
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 HP:0001482 Subcutaneous nodules 
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 HP:0001634 Mitral valve prolapse 
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 HP:0001635 Congestive heart failure "The presence of an abnormality of cardiac function that is responsible for the failure of the heart to pump blood at a rate that is commensurate with the needs of the tissues or a state in which abnormally elevated filling pressures are required for the heart to do so. Heart failure is frequently related to a defect in myocardial contraction." [HPO:curators]
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 HP:0001645 Sudden cardiac death 
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 HP:0001658 Myocardial infarction 
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 HP:0001681 Angina pectoris 
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 HP:0001717 Coronary artery calcification 
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 HP:0001718 Mitral stenosis 
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 HP:0001723 Restrictive cardiomyopathy 
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 HP:0001872 Abnormality of thrombocytes 
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 HP:0002172 Postural instability 
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 HP:0002239 Gastrointestinal hemorrhage 
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 HP:0002514 Cerebral calcification "The presence of calcification within brain structures." [HPO:curators]
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 HP:0002617 Aneurysm 
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 HP:0002621 Atherosclerosis "A condition characterized by patchy atheromas or atherosclerotic plaques which develop in the walls of medium-sized and large arteries and can lead to arterial stenosis with reduced or blocked blood flow." [HPO:curators]
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002705 High, narrow palate "The presence of a high and narrow palate." [HPO:curators]
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 HP:0002808 Kyphosis 
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 HP:0004306 Abnormality of the endocardium "An abnormality of the `endocardium` (FMA:7280)." [HPO:probinson]
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 HP:0004374 Hemiplegia/hemiparesis "Loss of strength in the arm, leg, and sometimes face on one side of the body. Hemiplegia refers to a severe or complete loss of strength, whereas hemiparesis refers to a relatively mild loss of strength." [HPO:curators]
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 HP:0004417 Intermittent claudication 
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 HP:0004912 hypophosphatemic rickets 
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 HP:0004943 Accelerated atherosclerosis 
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 HP:0004966 Medial calcification of medium-sized and major arteries 
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 HP:0005297 Premature occlusive vascular disease 
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 HP:0005462 Calcification of falx cerebri 
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 HP:0005692 Joint hyperflexibility 
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 HP:0007392 Excessive wrinkled skin 
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 HP:0007663 Decreased central vision 
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 HP:0012457 Medial calcification of medium-sized arteries "`Calcification` (PATO:0001447), that is, pathological deposition of calcium salts in the tunica media of medium-sized (muscular or distributive) arteries." [HPO:probinson]
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 HP:0012508 Metamorphopsia "A visual anomaly in which images appear distorted. A grid of straight lines appears wavy and parts of the grid may appear blank." [HPO:probinson]
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 HP:0025115 Civatte bodies "Eosinophilic hyaline ovoid bodies which are often found in the subepidermal papillary regions or sometimes in the epidermis. Civatte bodies (CBs) are seen as rounded, homogenous, eosinophilic masses on routine H and E staining lying in the deeper parts of epidermis/epithelium and more frequently in dermis/connective tissue. They are known as CBs (in epithelium/epidermis), colloid bodies, or hyaline bodies (in connective tissue). They are 10-25 micrometers in diameter and situated mostly within or above the inflammatory cell infiltrate. In lichen planus, the number of necrotic keratinocytes may be so large that they are seen lying in clusters in the uppermost dermis. These bodies show a positive periodic acid Schiff reaction and are diastase resistant" [PMID:23919028]
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 HP:0025507 Yellow papule "A papule with yellow color." []
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 HP:0025533 Peau d orange 
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 HP:0100545 Arterial stenosis 
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 HP:0100585 Teleangiectasia of the skin 
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 HP:0100659 Abnormality of the cerebral vasculature 
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 HP:0100817 Renovascular hypertension "The presence of `hypertension` (HP:0000822) related to stenosis of the `renal artery` (FMA:14751)." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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