ENSG00000100360


Homo sapiens

Features
Gene ID: ENSG00000100360
  
Biological name :IFT27
  
Synonyms : IFT27 / intraflagellar transport 27 / Q9BW83
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 22
Strand: -1
Band: q12.3
Gene start: 36758202
Gene end: 36776256
  
Corresponding Affymetrix probe sets: 205037_at (Human Genome U133 Plus 2.0 Array)   213784_at (Human Genome U133 Plus 2.0 Array)   243812_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000392016
Ensembl peptide - ENSP00000404556
Ensembl peptide - ENSP00000399606
Ensembl peptide - ENSP00000393541
Ensembl peptide - ENSP00000343593
Ensembl peptide - ENSP00000390016
NCBI entrez gene - 11020     See in Manteia.
OMIM - 615870
RefSeq - XM_017028540
RefSeq - NM_001177701
RefSeq - NM_006860
RefSeq - XM_006724106
RefSeq Peptide - NP_006851
RefSeq Peptide - NP_001171172
swissprot - H0Y6C7
swissprot - Q9BW83
swissprot - B1AH56
swissprot - F5GZ09
swissprot - B1AH58
Ensembl - ENSG00000100360
  
Related genetic diseases (OMIM): 615996 - ?Bardet-Biedl syndrome 19, 615996
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 IFT27ENSGALG00000042990Gallus gallus
 Ift27ENSMUSG00000016637Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001806  Small GTPase superfamily
 IPR005225  Small GTP-binding protein domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR034112  Intraflagellar transport protein 27 homologue, eukaryotes


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0007224 smoothened signaling pathway IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0035735 intraciliary transport involved in cilium assembly TAS
 biological_processGO:0042073 intraciliary transport ISS
 biological_processGO:0060122 inner ear receptor cell stereocilium organization IEA
 biological_processGO:0090102 cochlea development IEA
 cellular_componentGO:0005768 endosome IBA
 cellular_componentGO:0005794 Golgi apparatus IBA
 cellular_componentGO:0005813 centrosome IEA
 cellular_componentGO:0005929 cilium TAS
 cellular_componentGO:0030992 intraciliary transport particle B IEA
 cellular_componentGO:0031514 motile cilium ISS
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0097225 sperm midpiece IEA
 cellular_componentGO:0097228 sperm principal piece IEA
 cellular_componentGO:0097542 ciliary tip TAS
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005525 GTP binding IEA


Pathways (from Reactome)
Pathway description
Intraflagellar transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000003 Multicystic kidney "Multicystic dysplasia of the kidney is characterized by multiple cysts of varying size in the kidney and the absence of a normal pelvocaliceal system. The condition is associated with ureteral or ureteropelvic atresia, and the affected kidney is nonfunctional." [HPO:curators]
Show

 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
Show

 HP:0000083 Renal failure 
Show

 HP:0000100 Nephrotic syndrome 
Show

 HP:0000135 Hypogonadism "Reduced function of the gonads (testes in males or ovaries in females)." [HPO:curators]
Show

 HP:0000365 Hearing loss 
Show

 HP:0000368 Low-set, posteriorly rotated ears 
Show

 HP:0000426 Prominent nasal bridge 
Show

 HP:0000470 Short neck 
Show

 HP:0000494 Downward slanting palpebral fissures 
Show

 HP:0000510 Retinitis pigmentosa "Hereditary degeneration and atrophy of the retina." [HPO:curators]
Show

 HP:0000512 Abnormal electroretinogram "Any abnormality of the electrical responses of various cell types in the retina as measured by electroretinography." [HPO:curators]
Show

 HP:0000580 Pigmentary retinopathy 
Show

 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
Show

 HP:0000822 Hypertension "High blood pressure." [HPO:curators]
Show

 HP:0001162 Postaxial polydactyly (hands) "Supernumerary digits located at the ulnar side of the hand." [HPO:curators]
Show

 HP:0001249 Mental retardation 
Show

 HP:0001395 Hepatic fibrosis 
Show

 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
Show

 HP:0002167 Neurological speech impairment 
Show

 HP:0002230 Generalized hirsutism "Abnormally increased hair growth over much of the entire body." [HPO:curators]
Show

 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
Show

 HP:0003241 Genital hypoplasia 
Show

 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
Show

 HP:0004409 Hyposmia "A decreased sensitivity to odorants (that is, a decreased ability to perceive odors)." [HPO:curators]
Show

 HP:0006101 Finger syndactyly "Webbing or fusion of the fingers, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
Show

 HP:0008724 Hypoplastic ovary 
Show

 HP:0008736 Hypoplasia of penis 
Show

 HP:0010442 Polydactyly 
Show

 HP:0010747 Medial flaring of the eyebrow "An abnormal distribution of eyebrow hair growth in the medial direction." [HPO:probinson]
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr