ENSG00000104356


Homo sapiens

Features
Gene ID: ENSG00000104356
  
Biological name :POP1
  
Synonyms : POP1 / POP1 homolog, ribonuclease P/MRP subunit / Q99575
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 8
Strand: 1
Band: q22.2
Gene start: 98117297
Gene end: 98159834
  
Corresponding Affymetrix probe sets: 213449_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000428945
Ensembl peptide - ENSP00000339529
Ensembl peptide - ENSP00000385787
NCBI entrez gene - 10940     See in Manteia.
OMIM - 602486
RefSeq - XM_011516801
RefSeq - NM_001145860
RefSeq - NM_001145861
RefSeq - NM_015029
RefSeq Peptide - NP_001139332
RefSeq Peptide - NP_001139333
RefSeq Peptide - NP_055844
swissprot - Q99575
swissprot - E5RK39
Ensembl - ENSG00000104356
  
Related genetic diseases (OMIM): 617396 - Anauxetic dysplasia 2, 617396
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pop1ENSDARG00000102087Danio rerio
 POP1ENSGALG00000032042Gallus gallus
 Pop1ENSMUSG00000022325Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR009723  Ribonuclease P/MRP, subunit POP1
 IPR012590  POPLD


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001682 tRNA 5"-leader removal TAS
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0008033 tRNA processing IBA
 biological_processGO:0016078 tRNA catabolic process IDA
 biological_processGO:0090501 RNA phosphodiester bond hydrolysis IEA
 biological_processGO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic IEA
 cellular_componentGO:0000172 ribonuclease MRP complex IDA
 cellular_componentGO:0005615 extracellular space HDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005655 nucleolar ribonuclease P complex IDA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0030681 multimeric ribonuclease P complex IDA
 molecular_functionGO:0000171 ribonuclease MRP activity IDA
 molecular_functionGO:0003723 RNA binding HDA
 molecular_functionGO:0004526 ribonuclease P activity IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
tRNA processing in the nucleus


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000158 Macroglossia "Increased length and width of the tongue." [pmid:19125428]
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 HP:0000470 Short neck 
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 HP:0000668 Hypodontia "Hypodontia describes a situation when there are fewer than the normal number of teeth, whereby 6 teeth or fewer teeth are missing (oligodontia refers to the condition of missing more than 6 teeth and the congenital absence of all teeth is called anodontia)." [HPO:curators]
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 HP:0001156 Brachydactyly 
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 HP:0001792 Nail hypoplasia "Underdeveloped `fingernails` (FMA:54327) or `toenails` (FMA:54328)." [HPO:probinson]
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 HP:0002164 Nail dysplasia 
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 HP:0002673 Coxa valga "Coxa valga is a deformity of the hip in which the angle between the femoral shaft and the femoral neck is increased compared to age-adjusted values (about 150 degrees in newborns gradually reducing to 120-130 degrees in adults)." [HPO:curators]
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 HP:0002750 Delayed skeletal maturation "A decreased rate of skeletal maturation. Delayed skeletal maturation can be diagnosed on the basis of an estimation of the bone age from radiographs of specific bones in the human body." [HPO:curators]
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 HP:0002812 Coxa vara 
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 HP:0002967 Cubitus valgus 
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 HP:0003300 Ovoid vertebral bodies 
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 HP:0003423 Thoracolumbar kyphoscoliosis 
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 HP:0004482 Relative macrocephaly "A relatively mild degree of macrocephaly in which the head circumference is not above two standard deviations from the mean, but appears dysproportionately large when other factors such as body stature are taken into account." [HPO:curators]
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 HP:0008070 Sparse hair 
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 HP:0008802 Hypoplastic femoral head 
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 HP:0008824 Hypoplastic iliac body 
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 HP:0010646 Cervical spine instability "An abnormal lack of stability of the cervical spine." [HPO:curators]
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 HP:0011800 Midface retrusion "Posterior positions and/or vertical shortening of the infraorbital and perialar regions, or increased concavity of the face and/or reduced nasolabial angle." [DDD:jclayton-smith]
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 HP:0100864 Hypoplasia of the femoral neck 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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