ENSG00000106009


Homo sapiens

Features
Gene ID: ENSG00000106009
  
Biological name :BRAT1
  
Synonyms : BRAT1 / BRCA1 associated ATM activator 1 / Q6PJG6
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 7
Strand: -1
Band: p22.3
Gene start: 2537877
Gene end: 2555727
  
Corresponding Affymetrix probe sets: 225437_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000339637
Ensembl peptide - ENSP00000409209
NCBI entrez gene - 221927     See in Manteia.
OMIM - 614506
RefSeq - XM_017011836
RefSeq - NM_152743
RefSeq - XM_017011833
RefSeq - XM_017011834
RefSeq - XM_017011835
RefSeq - XM_005249643
RefSeq - XM_011515177
RefSeq - XM_011515178
RefSeq - XM_011515179
RefSeq - XM_011515181
RefSeq - XM_011515182
RefSeq - XM_011515183
RefSeq - XM_011515184
RefSeq - XM_011515186
RefSeq Peptide - NP_689956
swissprot - Q6PJG6
swissprot - F8WDN5
Ensembl - ENSG00000106009
  
Related genetic diseases (OMIM): 614498 - Rigidity and multifocal seizure syndrome, lethal neonatal, 614498
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 brat1ENSDARG00000062585Danio rerio
 ENSGALG00000004348Gallus gallus
 Brat1ENSMUSG00000000148Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000357  HEAT repeat
 IPR011989  Armadillo-like helical
 IPR016024  Armadillo-type fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001934 positive regulation of protein phosphorylation IMP
 biological_processGO:0006006 glucose metabolic process IMP
 biological_processGO:0006915 apoptotic process IMP
 biological_processGO:0006974 cellular response to DNA damage stimulus IMP
 biological_processGO:0008283 cell proliferation IMP
 biological_processGO:0010212 response to ionizing radiation IMP
 biological_processGO:0016477 cell migration IMP
 biological_processGO:0030307 positive regulation of cell growth IMP
 biological_processGO:0051646 mitochondrion localization IMP
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0016020 membrane HDA
 molecular_functionGO:0005488 binding IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000253 Microcephaly, progressive "Progressive microcephaly is diagnosed when the head circumference falls progressively behind age- and gender-dependent norms." [HPO:curators]
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000648 Optic atrophy 
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001276 Hypertonia 
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 HP:0001371 Contractures 
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 HP:0001522 Death in infancy 
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 HP:0001662 Bradycardia 
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 HP:0002063 Rigidity 
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 HP:0002104 Apnea "Lack of breathing with no movement of the respiratory muscles and no exchange of air in the lungs. This term refers to a disposition to have recurrent episodes of apnea rather than to a single event." [HPO:curators]
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 HP:0002123 Myoclonic seizures "Myoclonic seizures are sudden, brief losses of consciousness and postural tone not associated with tonic muscular contractions. Myoclonic seizures may involve one body part or the entire body. In the latter case, the myoclonic seizure is accompanied by a violent fall but not by loss of consciousness." [HPO:curators]
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 HP:0002169 Clonus 
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 HP:0002171 Gliosis 
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 HP:0002459 Dysautonomia 
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 HP:0002529 Neuropathology shows neuronal loss in basal ganglia, brainstem, and cerebellum 
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 HP:0003487 Babinski sign "Upturning of the big toe (and sometimes fanning of the other toes) in response to stimulation of the sole of the foot. If the Babinski sign is present it can indicate damage to the corticospinal tract." [HPO:curators]
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 HP:0003739 Myoclonic spasms 
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 HP:0012448 Delayed myelination "`Delayed` (PATO:0000502) `myelination` (GO:0042552)." [ORCID:0000-0001-5208-3432]
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 HP:0031165 Multifocal seizures "Seizures that start from several different areas of the brain (i.e., with multiple ictal onset locations)." [PMID:27091239]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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