ENSG00000106392


Homo sapiens

Features
Gene ID: ENSG00000106392
  
Biological name :C1GALT1
  
Synonyms : C1GALT1 / core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 / Q9NS00
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 7
Strand: 1
Band: p22.1
Gene start: 7156934
Gene end: 7248651
  
Corresponding Affymetrix probe sets: 219439_at (Human Genome U133 Plus 2.0 Array)   226105_at (Human Genome U133 Plus 2.0 Array)   226107_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000415400
Ensembl peptide - ENSP00000223122
Ensembl peptide - ENSP00000384550
Ensembl peptide - ENSP00000389176
Ensembl peptide - ENSP00000407666
NCBI entrez gene - 56913     See in Manteia.
OMIM - 610555
RefSeq - XM_017012449
RefSeq - XM_017012444
RefSeq - XM_017012445
RefSeq - XM_017012446
RefSeq - XM_017012447
RefSeq - XM_017012448
RefSeq - NM_020156
RefSeq - XM_005249812
RefSeq - XM_011515453
RefSeq - XM_011515455
RefSeq - XM_011515456
RefSeq - XM_017012442
RefSeq - XM_017012443
RefSeq Peptide - NP_064541
swissprot - C9K0C8
swissprot - C9JDX1
swissprot - A0A024RA32
swissprot - Q9NS00
Ensembl - ENSG00000106392
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 C1GALT1 (1 of many)ENSDARG00000099098Danio rerio
 si:dkey-202e17.1ENSDARG00000062278Danio rerio
 Q5F3G7ENSGALG00000009752Gallus gallus
 Q9JJ06ENSMUSG00000042460Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q96EU7 / C1GALT1C1 / C1GALT1 specific chaperone 1ENSG0000017115523
P0DN25 / C1GALT1C1L / C1GALT1-specific chaperone 1 likeENSG0000022365819
B3GLCT / Q6Y288 / beta 3-glucosyltransferaseENSG0000018767619


Protein motifs (from Interpro)
Interpro ID Name
 IPR003378  Fringe-like
 IPR026842  Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001525 angiogenesis IMP
 biological_processGO:0001822 kidney development IMP
 biological_processGO:0006486 protein glycosylation IEA
 biological_processGO:0006493 protein O-linked glycosylation IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0016266 O-glycan processing TAS
 biological_processGO:0016267 O-glycan processing, core 1 IBA
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0060576 intestinal epithelial cell development IEA
 cellular_componentGO:0000139 Golgi membrane TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0016263 glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity IDA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016757 transferase activity, transferring glycosyl groups IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
O-linked glycosylation of mucins


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000171155 Q96EU7 / C1GALT1C1 / C1GALT1 specific chaperone 1  / complex






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr