ENSG00000108474


Homo sapiens

Features
Gene ID: ENSG00000108474
  
Biological name :PIGL
  
Synonyms : phosphatidylinositol glycan anchor biosynthesis class L / PIGL / Q9Y2B2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 17
Strand: 1
Band: p11.2
Gene start: 16217191
Gene end: 16351797
  
Corresponding Affymetrix probe sets: 1560391_at (Human Genome U133 Plus 2.0 Array)   205873_at (Human Genome U133 Plus 2.0 Array)   213889_at (Human Genome U133 Plus 2.0 Array)   232262_at (Human Genome U133 Plus 2.0 Array)   239943_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000463754
Ensembl peptide - ENSP00000463540
Ensembl peptide - ENSP00000464424
Ensembl peptide - ENSP00000485657
Ensembl peptide - ENSP00000470064
Ensembl peptide - ENSP00000225609
Ensembl peptide - ENSP00000379185
Ensembl peptide - ENSP00000462432
NCBI entrez gene - 9487     See in Manteia.
OMIM - 605947
RefSeq - XM_017025356
RefSeq - NM_004278
RefSeq - XM_017025349
RefSeq - XM_017025350
RefSeq - XM_017025351
RefSeq - XM_017025352
RefSeq - XM_017025353
RefSeq - XM_017025354
RefSeq - XM_017025355
RefSeq Peptide - NP_004269
swissprot - B4DJK6
swissprot - A8MTV0
swissprot - J3KSD1
swissprot - Q9Y2B2
swissprot - J3QQI7
swissprot - M0QYT4
swissprot - A0A096LPK2
swissprot - J3QLG8
Ensembl - ENSG00000108474
  
Related genetic diseases (OMIM): 280000 - CHIME syndrome, 280000
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 piglENSDARG00000067752Danio rerio
 ENSGALG00000004492Gallus gallus
 PiglENSMUSG00000014245Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003737  N-acetylglucosaminyl phosphatidylinositol deacetylase-related
 IPR024078  Putative deacetylase LmbE-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006506 GPI anchor biosynthetic process NAS
 biological_processGO:0016254 preassembly of GPI anchor in ER membrane TAS
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0000225 N-acetylglucosaminylphosphatidylinositol deacetylase activity TAS
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
Synthesis of glycosylphosphatidylinositol (GPI)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000074 Ureteropelvic junction obstruction 
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 HP:0000081 Duplicated collecting system 
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 HP:0000098 Increased body height 
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 HP:0000126 Hydronephrosis 
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 HP:0000154 Wide mouth "Abnormally wide mouth." [HPO:curators]
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000179 Prominent lower lip "Increased thickness of the lower lip, leading to a prominent appearance of the lower lip." [HPO:curators]
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 HP:0000248 Brachycephaly "Brachycephaly refers to a short, wide head, which is often caused by premature closure of both coronal sutures." [HPO:curators]
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 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000322 Short philtrum 
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 HP:0000356 Abnormality of the outer ear "An abnormality of the outer ear, which is also known as `pinna` (FMA:56580 ) or auricle." [HPO:probinson]
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 HP:0000365 Hearing loss 
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 HP:0000396 Overfolded helices "A condition in which the upper edge of the ear is folded over to a greater degree than normal." [HPO:curators]
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 HP:0000405 Hearing loss, conductive 
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000457 Flat nose 
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 HP:0000465 Webbed neck 
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 HP:0000480 Retinal coloboma 
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000582 Upslanting palpebral fissures 
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 HP:0000668 Hypodontia "Hypodontia describes a situation when there are fewer than the normal number of teeth, whereby 6 teeth or fewer teeth are missing (oligodontia refers to the condition of missing more than 6 teeth and the congenital absence of all teeth is called anodontia)." [HPO:curators]
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 HP:0000687 Widely spaced teeth 
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 HP:0000691 Microdontia 
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 HP:0000717 Autism 
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 HP:0000962 Hyperkeratosis "Hyperkeratosis is thickening of the outer layer of the skin, the stratum corneum, which is composed of large, polyhedral, plate-like envelopes filled with keratin which are the dead cells that have migrated up from the stratum granulosum." [HPO:curators]
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 HP:0000972 Palmoplantar hyperkeratosis "`Hyperkeratosis` (HP:0000962) affecting the palm of the hand and the sole of the foot." [HPO:probinson]
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 HP:0001006 Hypotrichosis "Reduced or lacking hair growth." [HPO:curators]
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 HP:0001176 Large hands 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001520 Large for gestational age "The term large for gestational age applies to babies whose birth weight lies above the 90th percentile for that gestational age." [HPO:curators]
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 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
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 HP:0001636 Tetralogy of Fallot "A congenital cardiac malformation comprising pulmonary stenosis, overriding aorta, ventricular septum defect, and right ventricular hypertrophy. The diagnosis of TOF is made if at least three of the four above mentioned features are present." [HPO:curators]
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 HP:0001669 Transposition of the great vessels 
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 HP:0001773 Short, broad feet "Abnormally short and wide feet." [HPO:curators]
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 HP:0001833 Large feet 
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 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
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 HP:0002059 Cerebral atrophy 
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 HP:0002120 Cerebral cortical atrophy 
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 HP:0002136 Broad-based gait "An abnormal gait pattern in which persons stand and walk with their feet spaced widely apart. This is often a component of cerebellar ataxia." [HPO:curators]
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 HP:0002213 Fine hair 
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 HP:0002488 Acute leukemia 
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 HP:0002557 Hypoplastic nipples 
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 HP:0002562 Low-set nipples 
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 HP:0002797 Osteolysis 
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 HP:0002827 Dislocated hips 
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 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
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 HP:0004279 Hypoplastic hand 
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 HP:0004969 peripheral pulmonary artery stenosis 
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 HP:0005280 Depressed nasal root and bridge 
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 HP:0005930 Abnormality of the epiphyses 
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 HP:0006660 Aplastic clavicles 
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 HP:0006709 Aplasia/Hypoplasia of the nipples 
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 HP:0006721 Acute lymphatic leukemia "A form of acute leukemia characterized by excess lympoblasts." [HPO:curators]
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 HP:0007477 Abnormal dermatoglyphics "An abnormality of dermatoglyphs (fingerprints), which are present on fingers, palms, toes, and soles." [HPO:curators]
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 HP:0007957 Variable degree of corneal opacities 
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 HP:0008064 Ichthyosiform abnormality of the skin 
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 HP:0008070 Sparse hair 
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 HP:0008760 Violent behavior 
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 HP:0009473 Joint contractures involving the joints of the hand 
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 HP:0009767 Aplasia/Hypoplasia of the phalanges of the hand "Small or missing phalangeal bones of the fingers of the hand." [HPO:curators]
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 HP:0010173 Aplasia/Hypoplasia of the phalanges of the toes 
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 HP:0010783 Erythema "Redness of the skin, caused by hyperemia of the capillaries in the lower layers of the skin." [HPO:probinson]
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 HP:0010882 Pulmonary valve atresia "A congenital disorder of the pulmonary valve in which the orifice of the valve fails to develop." [HPO:probinson]
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 HP:0011069 Increased number of teeth "The presence of a `supernumerary` (PATO:0000470), i.e., extra, `tooth` (FMA:12516) or teeth." [HPO:ibailleulforestier]
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 HP:0011220 Prominent forehead "Forward prominence of the entire forehead, due to protrusion of the frontal bone." [pmid:19125436]
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 HP:0012471 Thick vermilion border "Increased width of the "skin of vermilion border region of upper lip" (FMA:312645)." [HPO:probinson]
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 HP:0100760 Clubbing of toes "Terminal broadening of the toes (distal phalanges of the toes)." [HPO:sdoelken]
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 HP:0200042 skin ulcer "A discontinuity of the skin exhibiting complete loss of the epidermis and often portions of the dermis and even subcutaneous fat." [HPO:SKOEHLER]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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