ENSG00000109536


Homo sapiens

Features
Gene ID: ENSG00000109536
  
Biological name :FRG1
  
Synonyms : FRG1 / FSHD region gene 1 / Q14331
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 4
Strand: 1
Band: q35.2
Gene start: 189940788
Gene end: 189963204
  
Corresponding Affymetrix probe sets: 204145_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000226798
Ensembl peptide - ENSP00000462603
Ensembl peptide - ENSP00000436535
Ensembl peptide - ENSP00000435943
Ensembl peptide - ENSP00000435067
NCBI entrez gene - 2483     See in Manteia.
OMIM - 601278
RefSeq - NM_004477
RefSeq - XM_017007958
RefSeq Peptide - NP_004468
swissprot - Q14331
swissprot - J3KSQ7
swissprot - E9PLY7
swissprot - E9PI42
swissprot - E9PRR7
Ensembl - ENSG00000109536
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 frg1ENSDARG00000056504Danio rerio
 ENSGALG00000013590Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR008999  Actin-crosslinking
 IPR010414  Protein FRG1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IC
 biological_processGO:0006364 rRNA processing IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0007517 muscle organ development IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0042254 ribosome biogenesis IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005730 nucleolus IBA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0015030 Cajal body IEA
 cellular_componentGO:0030018 Z disc IEA
 cellular_componentGO:0055120 striated muscle dense body IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IDA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003779 actin binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0051015 actin filament binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000298 Mask-like facies 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000499 Abnormality of the eyelashes "An abnormality of the `eyelashes` (FMA:53669)." [HPO:probinson]
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 HP:0000544 External ophthalmoplegia 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
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 HP:0002111 Restrictive respiratory insufficiency 
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 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
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 HP:0003236 Elevated serum creatine phosphokinase 
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 HP:0003307 Hyperlordosis 
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 HP:0003457 Abnormal EMG findings "Abnormal results of investigations using electromyography (EMG)." [HPO:curators]
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 HP:0003547 Shoulder girdle muscle weakness "The shoulder, or pectoral, girdle is composed of the clavicles and the scapulae. Shoulder-girdle weakness refers to lack of strength of the muscles attaching to these bones, that is, lack of strength of the muscles around the shoulders." [HPO:curators]
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 HP:0003677 Slow progression 
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 HP:0003691 Scapular winging 
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 HP:0003724 Shoulder girdle muscle atrophy "Amyotrophy affecting the muscles of the shoulder girdle." [HPO:curators]
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 HP:0007763 Retinal telangiectasia 
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 HP:0008046 Abnormality of the retinal vasculature 
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 HP:0008970 Scapulohumeral muscular dystrophy 
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 HP:0008981 Muscular hypertrophy, esp calf muscles "Muscle hypertrophy primarily affecting the calf muscles." [HPO:curators]
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 HP:0009023 Abdominal wall muscle weakness 
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 HP:0010628 Facial muscle weakness "A weakness of any or all of the muscles of the face of any etiology." [HPO:curators]
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 HP:0011463 Childhood onset "Onset of disease at the age of between 1 and 5 years." [DDD:hfirth]
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 HP:0012231 Exudative retinal detachment "A type of retinal detachment associated with leakage of fluid (exudate) from under the retina." [HPO:probinson]
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 HP:0012473 Tongue atrophy "Wasting of the `tongue` (FMA:54640)." [ORCID:0000-0001-5208-3432]
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 HP:0030664 Beevor s sign "Weakness of the inferior portion of the rectus abdominal muscle, which is ascertained clinically as follows. When a patient sits up or raises the head from a recumbent position, the umbilicus is displaced toward the head. This is the result of paralysis of the inferior portion of the rectus abdominal muscle, so that the upper fibres predominate pulling upwards the umbilicus." [PMID:2146943]
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 HP:0030680 Abnormality of cardiovascular system morphology "Any structural anomaly of the heart and great vessels." []
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 HP:0100540 Palpebral edema 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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