ENSG00000116127


Homo sapiens

Features
Gene ID: ENSG00000116127
  
Biological name :ALMS1
  
Synonyms : ALMS1 / ALMS1, centrosome and basal body associated protein
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: 1
Band: p13.1
Gene start: 73385758
Gene end: 73610793
  
Corresponding Affymetrix probe sets: 214220_s_at (Human Genome U133 Plus 2.0 Array)   214221_at (Human Genome U133 Plus 2.0 Array)   214707_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000478155
Ensembl peptide - ENSP00000496540
Ensembl peptide - ENSP00000482968
Ensembl peptide - ENSP00000479094
Ensembl peptide - ENSP00000399833
NCBI entrez gene - 7840     See in Manteia.
OMIM - 606844
RefSeq - NM_015120
RefSeq Peptide - NP_055935
swissprot - A0A087WZY3
swissprot - A0A087WV20
swissprot - A0A087WTU9
swissprot - H7C1D9
Ensembl - ENSG00000116127
  
Related genetic diseases (OMIM): 203800 - Alstrom syndrome, 203800
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 alms1ENSDARG00000074779Danio rerio
 ENSGALG00000044620Gallus gallus
 Alms1ENSMUSG00000063810Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q96M02 / C10orf90 / chromosome 10 open reading frame 90ENSG000001544933


Protein motifs (from Interpro)
Interpro ID Name
 IPR028781  Alstrom syndrome protein 1
 IPR029299  ALMS motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016197 endosomal transport IEA
 biological_processGO:0051492 regulation of stress fiber assembly IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005829 cytosol IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000026 Hypogonadism, male "Lack of function of the males gonads (i.e., testes)." [HPO:curators]
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 HP:0000055 Abnormality of female external genitalia 
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 HP:0000076 Vesicoureteral reflux "Abnormal (retrograde) movement of urine from the bladder into ureters or kidneys related to inadequacy of the valvular mechanism at the ureterovesicular junction or other causes." [HPO:curators]
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 HP:0000083 Renal failure 
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 HP:0000121 Nephrocalcinosis 
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 HP:0000123 Nephritis "The presence of inflammation affecting the kidney." [HPO:curators]
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 HP:0000147 polycystic ovaries 
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 HP:0000164 Abnormality of the teeth "Any abnormality of the primary (deciduous) or permanent teeth." [HPO:curators]
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 HP:0000230 Gingivitis 
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 HP:0000311 Round face "An unusually round appearance of the face." [HPO:curators]
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 HP:0000388 Otitis media 
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 HP:0000389 Chronic otitis media 
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 HP:0000408 Hearing loss, sensorineural, progressive 
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 HP:0000490 Deep set eyes 
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000523 Subcapsular cataracts 
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 HP:0000529 Progressive visual loss 
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 HP:0000532 Chorioretinal abnormality 
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 HP:0000548 Cone-rod dystrophy 
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 HP:0000580 Pigmentary retinopathy 
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 HP:0000613 Photophobia "Excessive sensitivity to light with the sensation of discomfort or pain in the eyes due to exposure to bright light." [HPO:curators]
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 HP:0000618 Blindness 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000716 Depression "A condition characterized by pervasive dysphoric mood, loss of interests, and inability to experience pleasure." [HPO:curators]
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 HP:0000717 Autism 
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 HP:0000722 Obsessive-compulsive disorder 
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 HP:0000771 Gynecomastia 
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 HP:0000795 Abnormality of the urethra "An abnormality of the urethra, i.e., of the tube which connects the urinary bladder to the outside of the body." [HPO:curators]
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 HP:0000815 Hypergonadotropic hypogonadism "Reduced function of the gonads (testes in males or ovaries in females) associated with excess pituitary gonadotropin secretion and resulting in delayed sexual development and growth delay." [HPO:curators]
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 HP:0000821 Hypothyroidism 
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 HP:0000822 Hypertension "High blood pressure." [HPO:curators]
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 HP:0000824 Growth hormone deficiency "Insufficient production of growth hormone, which is produced by the anterior pituitary gland." [HPO:curators]
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 HP:0000826 Precocious puberty "The onset of secondary sexual characteristics before a normal age. Although it is difficult to define normal age ranges because of the marked variation with which puberty begins in normal children, precocious puberty can be defined as the onset of puberty before the age of 8 years in girls or 9 years in boys." [HPO:curators]
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 HP:0000831 Insulin-resistant diabetes mellitus 
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 HP:0000842 Hyperinsulinemia 
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 HP:0000855 Insulin resistance 
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 HP:0000858 Menstrual irregularities 
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 HP:0000873 Diabetes insipidus "A state of excessive water intake and hypotonic (dilute) polyuria. Diabetes insipidus may be due to failure of vasopressin (AVP) release (central or neurogenic diabetes insipidus) or to a failure of the kidney to respond to AVP (nephrogenic diabetes insipidus)." [HPO:curators]
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 HP:0000956 Acanthosis nigricans 
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 HP:0001133 Constricted visual fields 
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 HP:0001155 Abnormality of the hand "An abnormality affecting one or both hands." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001394 Cirrhosis 
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 HP:0001397 Hepatic steatosis 
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 HP:0001409 Portal hypertension 
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 HP:0001596 Alopecia "Loss of hair from the head or body." [HPO:curators]
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 HP:0001635 Congestive heart failure "The presence of an abnormality of cardiac function that is responsible for the failure of the heart to pump blood at a rate that is commensurate with the needs of the tissues or a state in which abnormally elevated filling pressures are required for the heart to do so. Heart failure is frequently related to a defect in myocardial contraction." [HPO:curators]
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 HP:0001644 Dilated cardiomyopathy 
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 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
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 HP:0001763 Pes planus "A condition in which the arch of the foot is flat, with the entire sole of the foot being in near-complete contact with the ground." [HPO:curators]
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 HP:0001956 Truncal obesity "Obesity located preferentially in the trunk of the body as opposed to the extremities." [HPO:curators]
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 HP:0001970 Tubulointerstitial nephritis 
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 HP:0002092 Pulmonary hypertension 
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 HP:0002093 Respiratory insufficiency 
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 HP:0002099 Asthma "Asthma is characterized by increased responsiveness of the tracheobronchial tree to multiple stimuli, leading to narrowing of the air passages with resultant dyspnea, cough, and wheezing." [HPO:curators]
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 HP:0002149 Hyperuricemia "An abnormally high level of uric acid in the blood." [HPO:curators]
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 HP:0002155 Hypertriglyceridemia 
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 HP:0002205 Recurrent respiratory infections 
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 HP:0002206 Pulmonary fibrosis 
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 HP:0002230 Generalized hirsutism "Abnormally increased hair growth over much of the entire body." [HPO:curators]
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002621 Atherosclerosis "A condition characterized by patchy atheromas or atherosclerotic plaques which develop in the walls of medium-sized and large arteries and can lead to arterial stenosis with reduced or blocked blood flow." [HPO:curators]
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002808 Kyphosis 
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 HP:0002910 Elevated transaminases "Elevations of the levels of SGOT and SGPT in the serum. SGOT (serum glutamic oxaloacetic transaminase) and SGPT (serum glutamic pyruvic transaminase) are transaminases primarily found in the liver and heart and are released into the bloodstream as the result of liver or heart damage. SGOT and SGPT are used clinically mainly as markers of liver damage." [HPO:curators]
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 HP:0003233 Decreased HDL cholesterol 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004438 Hyperostosis frontalis interna "Bony overgrowth of the internal surface of frontal bone." [HPO:curators]
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 HP:0005616 Accelerated skeletal maturation "An abnormally increased rate of skeletal maturation. Accelerated skeletal maturation can be diagnosed on the basis of an estimation of the bone age from radiographs of specific bones in the human body." [HPO:curators]
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 HP:0005978 Noninsulin-dependent diabetes mellitus 
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 HP:0005987 Multinodular goiter 
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 HP:0006532 Pneumonia, recurrent episodes 
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 HP:0007360 Aplasia/Hypoplasia of the cerebellum 
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 HP:0008734 Decreased testicular size 
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 HP:0009124 Abnormality of adipose tissue "An abnormality of adipose (or fat) tissue, which is loose connective tissue composed of adipocytes." [HPO:curators]
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 HP:0100613 Death in early adulthood 
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 HP:0100626 Chronic hepatic failure 
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 HP:0100817 Renovascular hypertension "The presence of `hypertension` (HP:0000822) related to stenosis of the `renal artery` (FMA:14751)." [HPO:probinson]
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 HP:0100820 Glomerulopathy "Inflammatory or noninflammatory diseases affecting the glomeruli of the nephron." [HPO:sdoelken]
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 HP:0200120 Chronic active hepatitis 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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