ENSG00000117620


Homo sapiens

Features
Gene ID: ENSG00000117620
  
Biological name :SLC35A3
  
Synonyms : Q9Y2D2 / SLC35A3 / solute carrier family 35 member A3
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: 1
Band: p21.2
Gene start: 99969351
Gene end: 100035637
  
Corresponding Affymetrix probe sets: 206770_s_at (Human Genome U133 Plus 2.0 Array)   209865_at (Human Genome U133 Plus 2.0 Array)   226894_at (Human Genome U133 Plus 2.0 Array)   238881_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000491145
Ensembl peptide - ENSP00000490964
Ensembl peptide - ENSP00000491146
Ensembl peptide - ENSP00000492801
Ensembl peptide - ENSP00000492771
Ensembl peptide - ENSP00000492681
Ensembl peptide - ENSP00000492308
Ensembl peptide - ENSP00000492169
Ensembl peptide - ENSP00000492135
Ensembl peptide - ENSP00000492128
Ensembl peptide - ENSP00000491789
Ensembl peptide - ENSP00000491771
Ensembl peptide - ENSP00000491598
Ensembl peptide - ENSP00000491533
Ensembl peptide - ENSP00000491383
Ensembl peptide - ENSP00000491185
Ensembl peptide - ENSP00000359172
Ensembl peptide - ENSP00000359174
Ensembl peptide - ENSP00000414947
Ensembl peptide - ENSP00000418527
Ensembl peptide - ENSP00000433849
Ensembl peptide - ENSP00000436938
NCBI entrez gene - 23443     See in Manteia.
OMIM - 605632
RefSeq - XM_017000872
RefSeq - NM_001271684
RefSeq - NM_001271685
RefSeq - NM_012243
RefSeq - XM_005270691
RefSeq - XM_011541135
RefSeq - XM_011541136
RefSeq - XM_011541137
RefSeq - XM_011541138
RefSeq - XM_017000869
RefSeq - XM_017000870
RefSeq - XM_017000871
RefSeq Peptide - NP_001258614
RefSeq Peptide - NP_036375
RefSeq Peptide - NP_001258613
swissprot - A0A1C7CYW3
swissprot - E9PPQ9
swissprot - A0A1W2PSD1
swissprot - A0A1W2PRT7
swissprot - A0A1W2PRN3
swissprot - A0A1W2PR66
swissprot - A0A1W2PQL8
swissprot - A0A1W2PQH2
swissprot - A0A1W2PQ60
swissprot - A0A1W2PPW2
swissprot - A0A1W2PPH4
swissprot - A0A1W2PNY6
swissprot - A0A1W2PP85
swissprot - A0A1W2PNF0
swissprot - Q9Y2D2
Ensembl - ENSG00000117620
  
Related genetic diseases (OMIM): 615553 - ?Arthrogryposis, mental retardation, and seizures, 615553
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 slc35a3aENSDARG00000013222Danio rerio
 slc35a3bENSDARG00000020981Danio rerio
 SLC35A3ENSGALG00000005340Gallus gallus
 Q8R1T4ENSMUSG00000027957Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
P78381 / SLC35A2 / solute carrier family 35 member A2ENSG0000010210046
P78382 / SLC35A1 / solute carrier family 35 member A1ENSG0000016441434
Q9BS91 / SLC35A5 / solute carrier family 35 member A5ENSG0000013845925
L0R6Q1 / Q96G79 / SLC35A4 / solute carrier family 35 member A4ENSG0000017608720


Protein motifs (from Interpro)
Interpro ID Name
 IPR007271  Nucleotide-sugar transporter


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006047 UDP-N-acetylglucosamine metabolic process TAS
 biological_processGO:0008643 carbohydrate transport IEA
 biological_processGO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEA
 biological_processGO:1990569 UDP-N-acetylglucosamine transmembrane transport TAS
 cellular_componentGO:0000139 Golgi membrane IEA
 cellular_componentGO:0005794 Golgi apparatus TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005351 carbohydrate:proton symporter activity IEA
 molecular_functionGO:0005462 UDP-N-acetylglucosamine transmembrane transporter activity TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEA


Pathways (from Reactome)
Pathway description
Defective SLC35A3 causes arthrogryposis, mental retardation, and seizures (AMRS)
Transport of nucleotide sugars


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000308 Microretrognathia 
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 HP:0000729 Pervasive developmental disorder 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001256 Mental retardation, mild "Mild mental retardation is defined as an intelligence quotient (IQ) in the range of 50-69." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001385 Hip dysplasia 
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 HP:0001765 Hammer toes 
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 HP:0002121 Absence seizures "Recurrent absence seizures are `generalized seizures` (HP:0002197) that are characterized by a sudden cessation of motor activity and by a blank facial expression with flickering of the eyelids. There is no convulsive muscular activity or loss of postural control." [HPO:probinson]
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 HP:0002342 Mental retardation, moderate "Moderate mental retardation is defined as an intelligence quotient (IQ) in the range of 35-49." [HPO:curators]
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002804 Arthrogryposis multiplex congenita 
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 HP:0002827 Dislocated hips 
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 HP:0004976 Dislocations of the knees 
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 HP:0010864 Mental retardation, severe "Moderate mental retardation is defined as an intelligence quotient (IQ) in the range of 20-34." [HPO:probinson]
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 HP:0100490 Camptodactyly (hands) "Contractures of one ore more joints of the fingers." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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