ENSG00000119977


Homo sapiens

Features
Gene ID: ENSG00000119977
  
Biological name :TCTN3
  
Synonyms : Q6NUS6 / TCTN3 / tectonic family member 3
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 10
Strand: -1
Band: q24.1
Gene start: 95663396
Gene end: 95694143
  
Corresponding Affymetrix probe sets: 212121_at (Human Genome U133 Plus 2.0 Array)   212123_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000265993
Ensembl peptide - ENSP00000360261
Ensembl peptide - ENSP00000387567
Ensembl peptide - ENSP00000483364
Ensembl peptide - ENSP00000360253
NCBI entrez gene - 26123     See in Manteia.
OMIM - 613847
RefSeq - XM_011539628
RefSeq - NM_001143973
RefSeq - NM_015631
RefSeq - XM_005269690
RefSeq - XM_011539627
RefSeq Peptide - NP_001137445
RefSeq Peptide - NP_056446
swissprot - Q6NUS6
swissprot - A0A0C4DFN5
Ensembl - ENSG00000119977
  
Related genetic diseases (OMIM): 258860 - Orofaciodigital syndrome IV, 258860
  614815 - Joubert syndrome 18, 614815
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TCTN3ENSGALG00000010517Gallus gallus
 Tctn3ENSMUSG00000025008Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TCTN1 / Q2MV58 / tectonic family member 1ENSG0000020485228


Protein motifs (from Interpro)
Interpro ID Name
 IPR011677  Domain of unknown function DUF1619


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006915 apoptotic process IEA
 biological_processGO:0007224 smoothened signaling pathway IMP
 biological_processGO:0030030 cell projection organization IEA
 biological_processGO:0043065 positive regulation of apoptotic process IDA
 biological_processGO:0060271 cilium assembly IEA
 biological_processGO:0097711 ciliary basal body-plasma membrane docking TAS
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0060170 ciliary membrane TAS
 cellular_componentGO:0070062 extracellular exosome HDA


Pathways (from Reactome)
Pathway description
Anchoring of the basal body to the plasma membrane


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000085 Horseshoe kidney 
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 HP:0000104 Renal agenesis 
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 HP:0000143 Rectovaginal fistula "The presence of a fistula between the rectum and the vagina." [HPO:curators]
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 HP:0000157 Abnormality of the tongue "Any abnormality of the tongue." [HPO:curators]
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 HP:0000161 Median cleft lip "A type of `cleft lip` (HP:0000204) presenting as a midline (median) gap in the upper lip." [HPO:curators]
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 HP:0000168 Anormality of the gingiva "Any abnormality of the gingiva (also known as gums). The gingiva consists of the mucosal tissue that lies over the alveolar bone." [HPO:curators]
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000176 Submucous cleft palate "A cleft palate that is covered by the mucous membrane of the roof of the mouth, which can make the cleft more difficult to observe upon physical examination. Soft-palate submucous clefts are characterized by a midline deficiency or lack of muscle tissue. Hard-palate submucous clefts are characterized by bony defects in the midline of the bony palate. It may be possible to detect a submucous cleft palate upon palpation as a notch in the bony palate." [HPO:curators, pmid:19779505]
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 HP:0000180 Lobulated tongue 
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 HP:0000190 Frenular abnormality "An abnormality of the lingual frenulum, that is of the small fold of mucous membrane that attaches the tongue to the floor of the mouth." [HPO:probinson]
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 HP:0000191 Oral frenula 
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 HP:0000193 Bifid uvula "A split or cleft uvula." [HPO:curators]
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 HP:0000199 Tongue nodules 
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000276 Long face 
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 HP:0000278 Retrognathia 
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 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000322 Short philtrum 
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000358 Posteriorly rotated ears "A type of `abnormal location of the ears` (HP:0000357) in which the position of the ears is characterized by posterior rotation (the superior part of the ears is rotated towards the back of the head, and the inferior part of the ears towards the front)." [HPO:probinson]
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 HP:0000368 Low-set, posteriorly rotated ears 
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000405 Hearing loss, conductive 
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 HP:0000426 Prominent nasal bridge 
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 HP:0000445 Broad nose 
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 HP:0000453 Choanal atresia "Absence or abnormal closure of the choana (the posterior nasal aperture)." [HPO:curators]
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 HP:0000455 Broad nasal tip 
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 HP:0000457 Flat nose 
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 HP:0000496 Abnormality of eye movement "An abnormality in voluntary or involuntary eye movements or their control." [HPO:probinson]
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 HP:0000520 Proptosis 
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 HP:0000565 Esotropia 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000767 Pectus excavatum "A defect of the chest wall characterized by a depression of the sternum, giving the chest ("pectus") a caved-in ("excavatum") appearance." [HPO:curators]
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 HP:0001156 Brachydactyly 
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 HP:0001159 Syndactyly "Webbing or fusion of the fingers or toes, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers or toes in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0001161 Polydactyly (hands) 
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 HP:0001162 Postaxial polydactyly (hands) "Supernumerary digits located at the ulnar side of the hand." [HPO:curators]
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 HP:0001171 Ectrodactyly (hands) 
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 HP:0001177 Preaxial polydactyly (hands) "Supernumerary digits located at the radial side of the hand. Polydactyly (supernumerary digits) involving the thumb occurs in many distinct forms of high variability and severity. Ranging from fleshy nubbins over varying degrees of partial duplication/splitting to completely duplicated or even triplicated thumbs or preaxial (on the radial side of the hand) supernumerary digits." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001288 Gait disturbance "The term gait disturbance can refer to any disruption of the ability to walk. In general, this can refer to neurological diseases but also fractures or other sources of pain that is triggered upon walking. However, in the current context gait disturbance refers to difficulty walking on the basis of a neurological or muscular disease." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001320 Cerebellar vermis hypoplasia 
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 HP:0001328 Learning disability 
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 HP:0001337 Tremor "An unintentional, oscillating to-and-fro muscle movement." [HPO:curators]
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 HP:0001373 Joint dislocation "Displacement or malalignment of joints." [HPO:curators]
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 HP:0001388 Joint laxity 
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 HP:0001508 Failure to thrive 
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 HP:0001511 Intrauterine growth retardation 
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 HP:0001562 Oligohydramnios 
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 HP:0001601 Laryngomalacia 
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 HP:0001627 Cardiac abnormality "An abnormality of the `heart` (FMA:7088)." [HPO:probinson]
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 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
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 HP:0001770 Toe syndactyly "Webbing or fusion of the toes, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the toes in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0001800 Hypoplastic toenails "Underdeveloped toenails." [HPO:curators]
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 HP:0001829 Polydactyly (feet) 
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 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
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 HP:0002023 Anal atresia "Congenital absence of the anus, i.e., the opening at the bottom end of the intestinal tract." [HPO:curators]
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 HP:0002059 Cerebral atrophy 
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 HP:0002089 Pulmonary hypoplasia 
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 HP:0002104 Apnea "Lack of breathing with no movement of the respiratory muscles and no exchange of air in the lungs. This term refers to a disposition to have recurrent episodes of apnea rather than to a single event." [HPO:curators]
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 HP:0002132 Porencephaly 
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 HP:0002205 Recurrent respiratory infections 
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 HP:0002269 Neuronal migration disorder 
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 HP:0002419 Molar tooth sign on MRI 
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 HP:0002444 Hypothalamic hamartoma "Hypothalamic hamartoma is a malformation, not a tumor. Hypothalamic hamartomas grow at the rate of, or slower than, the surrounding brain tissue. A hamartoma of the hypothalamus appears as a non-enhancing mass in the floor of the third ventricle posterior to the optic chiasm that is isointense to grey matter on T1 and T2 pulse sequences of an MRI, but may have distinct intensity on FLAIR (neither cranial CT examination nor cranial ultrasound examination is adequate for diagnosis of hypothalamic hamartom). Individuals with hypothalamic hamartomas may have neurologic symptoms, although most are asymptomatic. Removal of the hypothalamic hamartoma is not indicated and often results in iatrogenic pituitary insufficiency." [HPO:curators]
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 HP:0002553 Arched eyebrows 
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 HP:0002705 High, narrow palate "The presence of a high and narrow palate." [HPO:curators]
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 HP:0002751 Kyphoscoliosis 
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 HP:0002876 Tachypnea, episodic 
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 HP:0002970 Genu varum 
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 HP:0002983 Micromelia 
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 HP:0003196 Nasal hypoplasia "Underdevelopment of the `nose` (FMA:46472)." [HPO:probinson]
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 HP:0003510 Short stature, severe "A severe degree of short stature." [HPO:curators]
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 HP:0003812 Phenotypic variability 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004422 Biparietal narrowing "A narrowing of the biparietal diameter (i.e., of the transverse distance between the protuberances of the two parietal bones of the skull)." [HPO:curators]
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 HP:0004871 Perineal fistula "The presence of a fistula (abnormal tunnel) between the bowel and the perineum (diamond-shaped region of the body between the pubic arch and the anus)." [HPO:curators]
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 HP:0005736 Hypoplastic tibia 
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 HP:0005772 Aplasia/Hypoplasia of the tibia "Absence or underdevelopment of the tibia." [HPO:curators]
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 HP:0005944 Bilateral lung agenesis 
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 HP:0006101 Finger syndactyly "Webbing or fusion of the fingers, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0006145 Central Y-shaped metacarpal "A central Y-shaped metacarpal is the result of a partial fusion of two central metacarpals (i.e., metacarpals 2-4) of the hand, with the two arms of the Y pointing in the distal direction. Central Y-shaped metacarpals may be seen as a result of a central polydactyly with partial fusion of the duplicated metacarpal." [HPO:curators]
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 HP:0007036 Hypoplasia of olfactory tract 
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 HP:0007370 Aplasia/Hypoplasia of the corpus callosum "Absence or underdevelopment of the corpus callosum." [HPO:curators]
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 HP:0008207 Primary adrenal insufficiency 
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 HP:0008689 Bilateral cryptorchidism 
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 HP:0008734 Decreased testicular size 
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 HP:0008872 Feeding problems in infancy 
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 HP:0009084 Midline notch of upper alveolar ridge 
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 HP:0009381 Hypoplastic/small fingers 
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 HP:0010285 Oral synechia "Fibrous band between the mucosal surfaces of the upper and lower alveolar ridges." [pmid:19125428]
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 HP:0010442 Polydactyly 
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 HP:0010469 Aplasia of the testes "Absence of the testes." [HPO:curators]
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 HP:0010566 Hamartoma "A disordered proliferation of mature tissues that is native to the site of origin - eg, exostoses, nevi and soft tissue hamartomas. Although most hamartomas are benign, some histologic subtypes - eg, neuromuscular hamartoma, may proliferate aggressively such as mesenchymal cystic hamartoma, Sclerosing epithelial hamartoma, Sclerosing metanephric hamartoma." [HPO:curators]
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 HP:0011255 Absent crus of helix "Continuum between the tragus and ascending helix, without any evidence of a posterior extension (crus) towards the concha." [pmid:19152421]
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 HP:0011267 Microtia, third degree "Presence of some auricular structures, but none of these structures conform to recognized ear components." [pmid:19152421]
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 HP:0011802 Hamartoma of tongue 
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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 HP:0012157 Subcortical cerebral atrophy "Atrophy of the cerebral subcortical white and gray matter, termed subcortical atrophy, reflects loss of nerve cells in the basal ganglia or fibers in the deep white matter." [HPO:probinson, pmid:20813998]
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 HP:0012385 Camptodactyly "The distal interphalangeal joint and/or the proximal interphalangeal joint of the fingers or toes cannot be extended to 180 degrees by either active or passive extension." [HPO:probinson]
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 HP:0025023 Rectal atresia "A developmental defect resulting in complete obliteration of the lumen of the rectum. That is, there is an abnormal closure, or atresia of the tubular structure of the rectum." [] {comment="HPO:probinson", comment="PMID:20006038"}
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 HP:0030084 Clinodactyly "An angulation of a digit at an interphalangeal joint in the plane of the palm (finger) or sole (toe)." [pmid:16252026]
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 HP:0030680 Abnormality of cardiovascular system morphology "Any structural anomaly of the heart and great vessels." []
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 HP:0030868 Monorchism "Having only one testis in the scrotum." [HPO:probinson]
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 HP:0040019 Finger clinodactyly 
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 HP:0100258 Preaxial polydactyly "A form of polydactyly in which the extra digit or digits are localized on the side of the thumb or great toe." [HPO:probinson]
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 HP:0100260 Central polydactyly 
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 HP:0100308 Cerebral cortical hemiatrophy 
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 HP:0100490 Camptodactyly (hands) "Contractures of one ore more joints of the fingers." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
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