ENSG00000124479


Homo sapiens

Features
Gene ID: ENSG00000124479
  
Biological name :NDP
  
Synonyms : NDP / NDP, norrin cystine knot growth factor / Q00604
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: X
Strand: -1
Band: p11.3
Gene start: 43948776
Gene end: 43973504
  
Corresponding Affymetrix probe sets: 206022_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000495972
Ensembl peptide - ENSP00000367301
Ensembl peptide - ENSP00000495811
NCBI entrez gene - 4693     See in Manteia.
OMIM - 300658
RefSeq - NM_000266
RefSeq Peptide - NP_000257
swissprot - Q00604
Ensembl - ENSG00000124479
  
Related genetic diseases (OMIM): 305390 - Exudative vitreoretinopathy 2, X-linked, 305390
  310600 - Norrie disease, 310600
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ndpENSDARG00000076569Danio rerio
 NDPENSGALG00000016222Gallus gallus
 NdpENSMUSG00000040138Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003064  Norrie disease protein
 IPR006207  Cystine knot, C-terminal
 IPR006208  Glycoprotein hormone subunit beta
 IPR029034  Cystine-knot cytokine


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001890 placenta development IEA
 biological_processGO:0007033 vacuole organization TAS
 biological_processGO:0007165 signal transduction TAS
 biological_processGO:0007267 cell-cell signaling TAS
 biological_processGO:0007399 nervous system development TAS
 biological_processGO:0007601 visual perception TAS
 biological_processGO:0007605 sensory perception of sound NAS
 biological_processGO:0008283 cell proliferation TAS
 biological_processGO:0010469 regulation of signaling receptor activity IEA
 biological_processGO:0016055 Wnt signaling pathway IEA
 biological_processGO:0035426 extracellular matrix-cell signaling IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0050896 response to stimulus IEA
 biological_processGO:0051091 positive regulation of DNA-binding transcription factor activity IEA
 biological_processGO:0060070 canonical Wnt signaling pathway IEA
 biological_processGO:0061299 retina vasculature morphogenesis in camera-type eye IEA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0009986 cell surface IDA
 cellular_componentGO:0031012 extracellular matrix IEA
 molecular_functionGO:0005109 frizzled binding IEA
 molecular_functionGO:0005125 cytokine activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008083 growth factor activity TAS
 molecular_functionGO:0042803 protein homodimerization activity IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000233 Thin vermillion border 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000272 Malar hypoplasia "Underdeveloped midface region." [HPO:curators]
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 HP:0000375 Abnormality of cochlea "An abnormality of the cochlea, which is an inner ear structure comprised of a snail-shell like structure divided into three fluid-filled parts. Two are canals for the transmission of pressure and in the third is the organ of Corti, which detects pressure impulses and responds with electrical impulses which travel along the auditory nerve to the brain." [HPO:curators]
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 HP:0000400 Large ears 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000411 Protruding ears 
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 HP:0000446 Narrow nasal bridge 
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000490 Deep set eyes 
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 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000532 Chorioretinal abnormality 
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 HP:0000541 Detached retina 
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 HP:0000568 Microphthalmos "A developmental anomaly characterized by abnormal smallness of one or both eyes." [HPO:curators]
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 HP:0000593 Abnormality of the anterior chamber "Abnormality of the anterior chamber, which is the space in the eye that is behind the cornea and in front of the iris." [HPO:curators]
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 HP:0000594 Shallow anterior chamber 
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 HP:0000601 Hypotelorism 
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 HP:0000615 Abnormality of the pupils 
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 HP:0000618 Blindness 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000647 Sclerocornea 
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 HP:0000648 Optic atrophy 
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 HP:0000709 Psychosis "A condition characterized by changes of personality and thought patterns often accompanied by hallucinations and delusional beliefs." [HPO:curators]
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 HP:0000717 Autism 
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 HP:0000718 Aggressive behavior "Aggressive behavior can denote verbal aggression, physical aggression against objects, physical aggression against people, and may also include aggression towards oneself." [HPO:curators]
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 HP:0000726 Dementia 
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 HP:0000733 Stereotyped, repetitive behaviour 
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 HP:0000737 Irritability 
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 HP:0000738 Hallucinations 
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 HP:0000739 Anxiety 
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 HP:0000819 Diabetes mellitus 
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 HP:0000823 Delayed puberty 
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 HP:0001083 Ectopia lentis 
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 HP:0001103 Abnormality of the macula 
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 HP:0001136 Retinal arteriolar tortuosity 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001276 Hypertonia 
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 HP:0001324 Muscle weakness "Reduced strength of muscles." [HPO:curators]
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 HP:0001419 X-linked recessive inheritance "A mode of inheritance that is observed for recessive traits related to a gene encoded on the X chromosome. In the context of medical genetics, X-linked recessive disorders manifest in males (who have one copy of the X chromosome and are thus hemizygotes), but generally not in female heterozygotes who have one mutant and one normal allele." [HPO:curators]
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 HP:0001493 Falciform retinal folds 
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 HP:0001508 Failure to thrive 
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 HP:0001518 Low birth weight 
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 HP:0001622 Premature birth 
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 HP:0002076 Migraine 
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 HP:0002120 Cerebral cortical atrophy 
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 HP:0002169 Clonus 
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 HP:0002353 EEG abnormalities "Abnormality observed by electroencephalogram (EEG), which is used to record of the brain s spontaneous electrical activity from multiple electrodes placed on the scalp." [HPO:curators]
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 HP:0002360 Sleep disturbances "An abnormality of sleep including such phenomena as 1) insomnia/hypersomnia, 2) non-restorative sleep, 3) sleep schedule disorder, 4) excessive daytime somnolence, 5) sleep apnea, and 6) restlessness." [HPO:curators]
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 HP:0002376 Developmental regression 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0004326 Cachexia 
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 HP:0005293 Frequent early-onset venous insufficiency 
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 HP:0006887 Mental retardation, progressive "Mental retardation is defined as a decreased intelligence quotient of varying degree. The term progressive mental retardation should be used if intelligence decreases/deteriorates over time." [HPO:curators]
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 HP:0007018 Attention deficit hyperactivity disorder "Attention deficit hyperactivity disorder (ADHD) manifests at age 2-3 years or by first grade at the latest. The main symptoms are distractibility, impulsivity, hyperactivity, and often trouble organizing tasks and projects, difficulty going to sleep, and social problems from being aggressive, loud, or impatient." [HPO:curators]
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 HP:0007360 Aplasia/Hypoplasia of the cerebellum 
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 HP:0007663 Decreased central vision 
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 HP:0007676 Hypoplasia of the iris 
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 HP:0007710 Peripheral vitreous opacities 
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 HP:0007759 Corneal opacities, not impairing visual acuity 
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 HP:0007833 Anterior chamber synechiae 
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 HP:0007902 Vitreous hemorrhage 
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 HP:0007917 Tractional retinal detachment 
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 HP:0007968 Persistent hyperplasia of primary vitreous 
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 HP:0007973 Retinal dysplasia 
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 HP:0007989 Subretinal and intraretinal exudates 
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 HP:0008046 Abnormality of the retinal vasculature 
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 HP:0008052 Abnormal retinal folds 
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 HP:0008053 Aplasia/Hypoplasia of the iris "Absence or underdevelopment of the iris." [HPO:curators]
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 HP:0008063 Aplasia/Hypoplasia of the lens "Absence or underdevelopment of the lens." [HPO:curators]
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 HP:0010662 Abnormality of the diencephalon "An abnormality of the `Diencephalon` (FMA:62001), which together with the cerebrum (telencephalon) makes up the forebrain." [HPO:probinson]
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 HP:0010978 Abnormality of immune system physiology "A functional abnormality of the `immune system` (FMA:9825)." [HPO:probinson, MP:0001790]
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 HP:0011039 Abnormality of the helix "An abnormality of the `helix` (FMA:60992)." [HPO:probinson]
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 HP:0011530 Retinal hole "A small break in the retina." [HPO:probinson]
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 HP:0011532 Subretinal exudate "A type of retinal exudate located in the subretinal space between the sensory retina and the retinal pigment epithelium." [HPO:probinson]
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 HP:0012841 Retinal vascular tortuosity "The presence of an increased number of twists and turns of the retinal blood vessels." [HPO:probinson]
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 HP:0030490 Exudative vitreoretinopathy 
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 HP:0030666 Retinal neovascularization "In wound repair, neovascularization (NV) involves the sprouting of new vessels from pre-existent vessels to repair or replace damaged vessels. In the retina, NV is a response to ischemia. The NV adheres to the inner surface of the retina and outer surface of the vitreous. NV are deficient in tight junctions and hence leak plasma into surrounding tissue including the vitreous. Plasma causes the vitreous gel to degenerate, contract, and eventually collapse which pulls on the retina. Since retinal NV is adherent to both retina and vitreous, as the vitreous contracts the NV may be sheared resulting in vitreous hemorrhage or the NV may remain intact and pull the retina with the vitreous resulting in retinal elevation referred to as traction retinal detachment." [PMID:23329331]
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 HP:0100012 Neoplasia of the eye 
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 HP:0100639 Erectile abnormalities 
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 HP:0100716 Autoagression "Aggression towards oneself." [HPO:sdoelken]
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 HP:0100718 Uterine rupture 
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 HP:0100742 Vascular neoplasm "A benign or malignant `neoplasm` (MPATH:218) (tumour) originating in the vascular system." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
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